geopandas
Guidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial operations, or vector-data I/O.
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Guidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial operations, or vector-data I/O.
Diagnoses why a session recording is missing or was not captured. Use when a user asks why a session has no replay, why recordings aren't appearing, or wants…
Diagnoses the health of a project's PostHog SDK integrations — which SDKs are out of date and how to fix them. Use when a user asks about PostHog SDK versions,…
Help users debug PostHog Error Tracking stack-trace symbolication for any supported platform — JavaScript/TypeScript web, React Native (Hermes), Android…
Ingest video, audio, PDF, book, screenshot, and GitHub repo content into the brain. Multi-format handling with entity extraction and backlink propagation.…
Ingest meeting transcripts from ANY meeting recorder into brain pages with attendee enrichment, entity propagation, and timeline merge. One unified pipeline:…
Universal migration from Obsidian, Notion, Logseq, markdown, CSV, JSON, Roam
Identify likely causal variants within GWAS loci using SuSiE for sum of single effects regression and FINEMAP for shotgun stochastic search. Computes posterior…
Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. Tests whether gene expression, methylation,…
Estimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR. Implements IVW, MR-Egger, weighted…
Annotate genetic variants (GWAS hits, eQTLs, rare variants) with ENCODE functional data to interpret non-coding variation. Use when the user has variants of…
Comprehensive guide for visualizing ENCODE data including deeptools heatmaps, IGV screenshots, UCSC track hubs, and publication-quality plots. Use when users…
Diff Item 1A Risk Factors between two 10-K filings for a name using Massive's pre-parsed and taxonomy-classified risk-factor endpoint. Reports categories…
VaR (historical + parametric), Expected Shortfall, max drawdown, beta, tracking error, position variance contributions, concentration metrics, and worst-N…
Rough-volatility-scaled vol forecast (Bayer-Friz-Gatheral 2016) for a ticker across multiple horizons. Under rough vol, realized vol scales as h^H with H…
Detect host inventory and effective CPU, memory, disk, scheduler, container, and accelerator limits when a user asks for resource-aware planning or before a…
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold structures,…
Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation…
Export PostHog events, persons, sessions, or the results of a HogQL query on demand and download the resulting files. Use when the user asks to download/export…
Designs and runs task-specific JavaScript harnesses with the `workflow` tool. Use for broad, long-running, highly structured, or adversarial work that benefits…
Find where an AI/LLM application is failing in production and surface the failure patterns, working from real traces. Use when someone wants to understand…
Unified Minions skill for both deterministic shell jobs and LLM subagent orchestration. Replaces the older `gbrain-jobs` routing intent. Use when: submitting…
Brain-augmented web research. Sends brain context about a topic to Perplexity, which searches the web with citations and returns what is NEW vs what the brain…
Detect which gbrain engine is in use (PGLite vs Postgres), prefer Postgres for agent-harness installs, install/provision Postgres (Supabase discovery via…
Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional…
Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio.…
Differential binding analysis using DiffBind. Compare ChIP-seq peaks between conditions with statistical rigor. Requires replicate samples. Outputs…
Research-tier idea generation with regime framing. Chains market-regime (context) + universe-builder (candidates) + relative-strength (rank candidates vs SPY).…
Change-detection layer on top of market-regime. market-regime reports current sector leadership as a snapshot; this skill tracks how the leadership order has…
Estimate the half-life of a candidate signal by computing rolling information coefficient (IC) vs forward returns over a 5-year window and fitting an…
Analyze and engineer protein glycosylation. Scan sequences for N-glycosylation sequons (N-X-S/T), predict O-glycosylation hotspots, and access curated…
Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase…
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing, tissue detection, tile extraction, and stain normalization for H&E images.…
Investigates distributed application performance using PostHog APM (OpenTelemetry span) data via MCP. Use when the user asks about service traces, slow…
Guides exploration of $autocapture events captured by posthog-js to understand user interactions, find CSS selectors (especially data-attr attributes),…
Explore and diagnose a PostHog endpoint's execution logs — error messages, failed runs, cache misses, slow runs, or unexpected row counts during endpoint…
Share brain pages as beautiful password-protected HTML with zero LLM calls
Answer questions using the brain's knowledge with 3-layer search, synthesis, and citation propagation. Use when the user asks a question, wants a lookup, or…
Publish the user's own gbrain over MCP so other devices, desktop apps and cloud agents can reach it. `gbrain mcp expose` installs and signs in Tailscale,…
De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. Identify transcription factor binding motifs in ChIP-seq, ATAC-seq, or…
Annotate ChIP-seq peaks to genomic features and genes using ChIPseeker. Assign peaks to promoters, exons, introns, and intergenic regions. Find nearest genes…
ChIP-seq peak calling using MACS3 (or MACS2). Call narrow peaks for transcription factors or broad peaks for histone modifications. Supports input control,…
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