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40,077 skills across 2,408 plugins. 1,867 of them fire as you prompt.
Build, run, and debug Nextflow data pipelines and nf-core workflows end to end. Use whenever the user mentions Nextflow, nf-core, .nf files, nextflow.config,…
Query the 1000 Genomes Project dataset (3,202 whole-genome-sequenced individuals, GRCh38) at the level of individual participants. Use when a question is about…
Work safely with endpoint versions — preview a draft in the playground, roll back to an older version, update settings on one version without bumping query…
Guides experiment state transitions: launching, pausing, resuming, freezing/unfreezing exposure, ending, shipping variants, archiving, resetting, duplicating,…
Inspects URL paths and proposes, tests, orders, and applies project-level path cleaning rules so dynamic segments (numeric IDs, UUIDs, slugs, dates) collapse…
Visualize copy number profiles, segments, and compare across samples. Create publication-quality plots of CNV data from CNVkit, GATK, or other callers. Use…
Detect copy number variants from targeted/exome sequencing using CNVkit. Supports tumor-normal pairs, tumor-only, and germline CNV calling. Use when detecting…
Call copy number variants using GATK best practices workflow. Supports both somatic (tumor-normal) and germline CNV detection from WGS or WES data. Use when…
Resolve free-text scientific labels to ontology term IDs and validate existing CURIEs against the EBI Ontology Lookup Service (OLS4). Also look up prefixes in…
Particle Image Velocimetry (PIV) analysis with OpenPIV. Use when extracting velocity fields from PIV image pairs, analyzing fluid dynamics or flow…
Create and manage PostHog reminders — private, human-paced nudges that fire as in-app notifications on a schedule, optionally linked to a PostHog resource. Use…
Create, deploy, and operate Streamlit apps in PostHog via the streamlit-apps MCP tools — create an app, set its source, start and stop its sandbox, poll…
Create and manage scheduled PostHog subscriptions for insight snapshots, dashboard snapshots, and AI prompt reports. Use when a user wants recurring email,…
Analyzes base editing and prime editing outcomes including editing efficiency, bystander edits, and indel frequencies. Use when quantifying CRISPR base editor…
Batch effect correction for CRISPR screens. Covers normalization across batches, technical replicate handling, and batch-aware analysis. Use when combining…
CRISPResso2 for analyzing CRISPR gene editing outcomes. Quantifies indels, HDR efficiency, and generates comprehensive editing reports. Use when analyzing…
Author, review, migrate, simulate, and troubleshoot official Opentrons Python Protocol API v2 protocols for Flex and OT-2 robots. Use for robot-specific liquid…
GPU-accelerates scientific Python on NVIDIA hardware and verifies that the result is correct and faster. Use for CUDA/GPU optimization; CPU-bound NumPy, SciPy,…
Operator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. Use this skill when the user needs to validate run inputs, generate…
Install, configure, authenticate, and troubleshoot MCP (Model Context Protocol) servers for this agent. Use when the user asks to add/install/remove an MCP…
Build reusable activation models — an activation-rate metric and a per-user/per-account activated flag — on either PostHog data-warehouse views (HogQL) or an…
Build reusable conversion models — funnel/step conversion rates, drop-off, and time-to-convert — on either PostHog data-warehouse views (HogQL) or an external…
Statistical methods for calling hits in CRISPR screens. Covers MAGeCK, BAGEL2, drugZ, and custom approaches for identifying essential and resistance genes. Use…
JACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens) for modeling sgRNA efficacy and gene essentiality. Use when analyzing multiple CRISPR screens…
CRISPR library design for genetic screens. Covers sgRNA selection, library composition, control design, and oligo ordering. Use when designing custom sgRNA…
Search 18 scholarly APIs for papers, preprints, citations, open-access full text, repository records, and journal OA status, and return results with…
Paperclip API key from https://paperclip.gxl.ai/keys. Preferred over browser OAuth. Not required — the skill also covers installing the CLI and signing in…
Chat with your agent about projects, recommendations, and canonical papers in Paperzilla. Use when users ask for recent project recommendations, canonical…
Build reusable dimension / lookup tables for a star schema — country/region, timezone, currency, date, plan/product, and other descriptive attributes — on…
Build reusable product-usage and engagement models — retention, stickiness, and lifecycle — on either PostHog data-warehouse views (HogQL) or an external dbt…
Build reusable revenue models — MRR, ARR, gross revenue, new/expansion/contraction/churn, ARPU, LTV, and per-customer/per-account revenue — on either PostHog…
MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout) for pooled CRISPR screen analysis. Covers count normalization, gene ranking, and pathway…
Quality control for pooled CRISPR screens. Covers library representation, read distribution, replicate correlation, and essential gene recovery. Use when…
Detects somatic mutations in circulating tumor DNA using variant callers optimized for low allele fractions with UMI-based error suppression. Reliably detects…
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