/manage-credentials
Store, check, or clear ENCODE API credentials for restricted data
$ npx -y skills add ammawla/encode-toolkit --agent claude-codeShips with encode-toolkit. Installing the plugin gets this command.
How it fires
How this command gets triggered: by you, by Claude, or both.
- Fires itselfClaude auto-loads it when your prompt matches the work.
- You can call itInvoke it directly when you want it.
- Slash command
/manage-credentials
Context preview
What this command does when you run it.
Store, check, or clear ENCODE API credentials for restricted data
Command definition
manage-credentials.mdname: manage-credentials description: Store, check, or clear ENCODE API credentials for restricted data
Manage ENCODE API credentials for accessing unreleased or restricted datasets.
Use `encode_manage_credentials` with action "store" to save credentials, "check" to verify configuration, or "clear" to remove stored credentials. Credentials are stored in your OS keyring (macOS Keychain, Linux Secret Service).
Most ENCODE data is public and requires no authentication.
Search ENCODE, cross-reference 14 databases, run 7 analysis pipelines, and generate publication-ready methods — all from natural language in Claude Code.
Repo: ammawla/encode-toolkit
Other commands on encode-toolkit.
- /browse-files
List, search, and inspect ENCODE files by format, type, and assembly
Open command - /cite-encode
Generate ENCODE citations for publications, grants, and presentations
Open command - /compare-experiments
Check if two ENCODE experiments are compatible for combined analysis
Open command - /cross-reference
Cross-reference ENCODE data with PubMed, GEO, ClinicalTrials, and bioRxiv
Open command - /download-encode
Download ENCODE files (BED, FASTQ, BAM, bigWig) with MD5 verification
Open command - /log-provenance
Log derived files and trace provenance back to ENCODE source data
Open command