/log-provenance

Log derived files and trace provenance back to ENCODE source data

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ammawla@ammawla

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encode-toolkit

2410 skills7 agents10 commands1 MCP

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> /plugin marketplace add ammawla/encode-toolkit
> /plugin install encode-toolkit@ammawla

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How this command gets triggered: by you, by Claude, or both.

Fires itselfClaude auto-loads it when your prompt matches the work.
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What this command does when you run it.

Log derived files and trace provenance back to ENCODE source data

Command definition

log-provenance.md

name: log-provenance
description: Log derived files and trace provenance back to ENCODE source data

Track provenance of files you create from ENCODE data.

Use `encode_log_derived_file` after creating derived files (filtered peaks, merged signals, differential analysis). Provide source accessions, tool used, and parameters. Use `encode_get_provenance` to trace any derived file back to its original ENCODE source.

Refer to the data-provenance skill for full provenance workflow guidance.

Read it on GitHub ↗

Ships withencode-toolkit

Search ENCODE, cross-reference 14 databases, run 7 analysis pipelines, and generate publication-ready methods — all from natural language in Claude Code.

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AGPL-3.0