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Comprehensive guide for building Agentic RAG systems using Microsoft Agent Framework in C#. Use when creating RAG applications with semantic search, document indexing, and intelligent agent orchestration. Includes scaffolding scripts, reference implementations, and documentation

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Comprehensive guide for building Agentic RAG systems using Microsoft Agent Framework in C#. Use when creating RAG applications with semantic search, document indexing, and intelligent agent orchestration. Includes scaffolding scripts, reference implementations, and documentation

SKILL.md

ms-agent-framework-rag.SKILL.md
name: ms-agent-framework-rag
description: Comprehensive guide for building Agentic RAG systems using Microsoft Agent Framework in C#. Use when creating RAG applications with semantic search, document indexing, and intelligent agent orchestration. Includes scaffolding scripts, reference implementations, and documentation for vector databases, embedding models, and multi-agent workflows.

Microsoft Agent Framework - Agentic RAG System

This skill provides scaffolding and guidance for building production-ready Agentic RAG (Retrieval-Augmented Generation) systems using Microsoft Agent Framework with C#.

Quick Start

Use the scaffolding script to create a new RAG system:

scripts/create_rag_system.sh <project-name> [--output-dir <path>]

Example:

scripts/create_rag_system.sh MyKnowledgeBase --output-dir ./my-rag-project

Architecture Overview

An Agentic RAG system consists of:

1. **Ingestion Layer**: Document parsing, chunking, and embedding generation 2. **Vector Store**: Semantic search index (Azure AI Search, Qdrant, or Pinecone) 3. **Agent Framework**: Multi-agent orchestration with Microsoft AutoGen 4. **LLM Integration**: Azure OpenAI or OpenAI API for generation 5. **API Layer**: RESTful endpoints for querying

Core Components

1. Semantic Search

  • Use Azure AI Search for integrated vector + keyword search
  • Store embeddings with metadata (source, timestamp, tags)
  • Implement hybrid search (vector + BM25) for best results

See `references/semantic_search.md` for implementation details.

2. Multi-Agent System

Build specialized agents:

  • **Research Agent**: Finds relevant documents
  • **Synthesis Agent**: Combines information from multiple sources
  • **Validation Agent**: Checks accuracy and citations

See `references/agent_patterns.md` for agent design patterns.

3. Document Processing

  • Supported formats: PDF, DOCX, TXT, MD, HTML
  • Chunking strategies: semantic, sliding window, hierarchical
  • Metadata extraction: title, author, date, tags

See `references/document_processing.md` for chunking strategies.

Available Scripts

`create_rag_system.sh`

Scaffolds a complete RAG system with:

  • Project structure following best practices
  • Configuration files (appsettings.json)
  • Docker compose for local development
  • Example agents and tools

Usage:

scripts/create_rag_system.sh <project-name> [--output-dir <path>]

`ingest_documents.sh`

Batch document ingestion:

scripts/ingest_documents.sh <source-dir> <index-name>

`run_local.sh`

Start the RAG system locally:

scripts/run_local.sh <project-dir>

Configuration

Required environment variables:

AZURE_OPENAI_ENDPOINT=<your-endpoint>
AZURE_OPENAI_API_KEY=<your-key>
AZURE_SEARCH_ENDPOINT=<your-search-endpoint>
AZURE_SEARCH_KEY=<your-search-key>
EMBEDDING_MODEL=text-embedding-ada-002
CHAT_MODEL=gpt-4

Reference Documentation

  • `references/semantic_search.md` - Vector search implementation
  • `references/agent_patterns.md` - Multi-agent design patterns
  • `references/document_processing.md` - Chunking and preprocessing
  • `references/evaluation.md` - RAG quality metrics

Best Practices

1. **Start Simple**: Begin with basic RAG, add agents incrementally 2. **Metadata Matters**: Rich metadata improves retrieval accuracy 3. **Hybrid Search**: Combine vector and keyword search 4. **Citation Tracking**: Always include source references 5. **Evaluation**: Use RAGAS framework for quality metrics

Common Patterns

Multi-Step Retrieval

For complex queries, use iterative refinement: 1. Initial search with broad query 2. Research agent expands with sub-queries 3. Synthesis agent combines results 4. Validation agent checks citations

Citation Management

Always track:

  • Document ID
  • Page number
  • Chunk index
  • Relevance score

See `references/citations.md` for implementation.

Troubleshooting

Poor Retrieval Quality

  • Adjust chunk size (try 512-1024 tokens)
  • Use hybrid search instead of pure vector
  • Add more metadata for filtering
  • Consider re-embedding with different model

Slow Performance

  • Enable caching on vector queries
  • Use streaming responses
  • Implement async document ingestion
  • Consider partitioning large indices

High Costs

  • Use smaller models for embeddings
  • Cache frequently asked questions
  • Implement result pagination
  • Use batch processing for ingestion
Read more
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