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Geospatial vector analysis extending pandas. Read/write spatial formats (Shapefile, GeoJSON, GeoPackage, Parquet, PostGIS), CRS handling, geometric ops (buffer, simplify, centroid, affine), spatial analysis (joins, overlays, dissolve, clipping, distance), visualization

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$ npx -y skills add jaechang-hits/SciAgent-Skills --skill geopandas-geospatial --agent claude-code

SKILL.md

geopandas-geospatial.SKILL.md
name: geopandas-geospatial
description: >-
  Geospatial vector analysis extending pandas. Read/write spatial formats
  (Shapefile, GeoJSON, GeoPackage, Parquet, PostGIS), CRS handling, geometric
  ops (buffer, simplify, centroid, affine), spatial analysis (joins, overlays,
  dissolve, clipping, distance), visualization (choropleth, interactive maps,
  basemaps). Use for spatial joins, overlays, CRS transforms, area/distance, maps.
license: BSD-3-Clause

GeoPandas Geospatial Analysis

Overview

GeoPandas extends pandas with spatial operations on geometric types, combining pandas DataFrames with Shapely geometries and Fiona for file I/O. It enables reading, writing, manipulating, and visualizing geospatial vector data (points, lines, polygons) with a familiar pandas-like API.

When to Use

  • Reading and writing spatial file formats (Shapefile, GeoJSON, GeoPackage, Parquet)
  • Performing spatial joins between geographic datasets (points in polygons, nearest neighbors)
  • Running overlay operations (intersection, union, difference, clipping)
  • Computing geometric properties (area, distance, buffer, centroid)
  • Creating choropleth maps and interactive web maps
  • Reprojecting data between coordinate reference systems
  • Aggregating spatial features by attribute (dissolve)
  • For raster data analysis, use rasterio/xarray instead
  • For large-scale distributed geospatial, consider Dask-GeoPandas or Apache Sedona

Prerequisites

pip install geopandas matplotlib
# Optional:
# pip install folium       — interactive maps
# pip install mapclassify  — classification schemes for choropleth
# pip install contextily   — basemaps
# pip install pyarrow      — faster I/O (2-4x speedup)
# pip install psycopg2 geoalchemy2  — PostGIS support

Quick Start

import geopandas as gpd

# Read spatial data
gdf = gpd.read_file("data.geojson")
print(f"Shape: {gdf.shape}, CRS: {gdf.crs}")
print(f"Geometry types: {gdf.geometry.geom_type.unique()}")

# Reproject, compute area, save
gdf_proj = gdf.to_crs("EPSG:3857")
gdf_proj['area_m2'] = gdf_proj.geometry.area
gdf_proj.to_file("output.gpkg")

# Quick map
gdf.plot(column='population', legend=True, figsize=(10, 8))

Core API

1. Data I/O

import geopandas as gpd

# Read various formats
gdf = gpd.read_file("data.shp")           # Shapefile
gdf = gpd.read_file("data.geojson")       # GeoJSON
gdf = gpd.read_file("data.gpkg")          # GeoPackage
gdf = gpd.read_file("data.gpkg", layer="roads")  # Specific layer

# Filtered reading (load only needed data)
gdf = gpd.read_file("data.gpkg", bbox=(xmin, ymin, xmax, ymax))
gdf = gpd.read_file("data.gpkg", columns=["name", "geometry"])
gdf = gpd.read_file("data.gpkg", where="population > 10000")

# Arrow acceleration (2-4x faster)
gdf = gpd.read_file("data.gpkg", use_arrow=True)

# Parquet/Feather (columnar, fast, preserves CRS)
gdf = gpd.read_parquet("data.parquet")
gdf.to_parquet("output.parquet")

# PostGIS database
from sqlalchemy import create_engine
engine = create_engine("postgresql://user:pass@host/db")
gdf = gpd.read_postgis("SELECT * FROM parcels", con=engine, geom_col='geom')
gdf.to_postgis("output_table", con=engine)

# Write
gdf.to_file("output.gpkg")             # GeoPackage (recommended)
gdf.to_file("output.shp")              # Shapefile
gdf.to_file("output.geojson", driver="GeoJSON")

2. CRS Management

# Check current CRS
print(gdf.crs)                  # e.g., EPSG:4326
print(gdf.crs.is_geographic)    # True for lat/lon
print(gdf.crs.is_projected)     # True for meters

# Reproject (transforms coordinates)
gdf_proj = gdf.to_crs("EPSG:3857")       # Web Mercator
gdf_proj = gdf.to_crs(epsg=32633)        # UTM zone 33N

# Set CRS (only when metadata missing, does NOT transform coordinates)
gdf = gdf.set_crs("EPSG:4326")

# Estimate appropriate UTM zone
utm_crs = gdf.estimate_utm_crs()
gdf_utm = gdf.to_crs(utm_crs)

**Common EPSG codes**:

| Code | Name | Use | |------|------|-----| | 4326 | WGS 84 | GPS coordinates, web data | | 3857 | Web Mercator | Web mapping (Google/OSM tiles) | | 326xx | UTM zones (N) | Area/distance calculations | | 5070 | Albers Equal Area (US) | Area-preserving US maps |

3. Geometric Operations

# Buffer (expand/erode geometry by distance)
buffered = gdf.geometry.buffer(100)      # 100 units (meters if projected)
eroded = gdf.geometry.buffer(-50)        # Negative = erosion

# Simplify (reduce complexity)
simplified = gdf.geometry.simplify(tolerance=10, preserve_topology=True)

# Centroid, convex hull, envelope
centroids = gdf.geometry.centroid
hulls = gdf.geometry.convex_hull
bounds = gdf.geometry.envelope

# Union all geometries
unified = gdf.geometry.union_all()

# Affine transformations
rotated = gdf.geometry.rotate(angle=45, origin='center')
scaled = gdf.geometry.scale(xfact=2.0, yfact=2.0)
translated = gdf.geometry.translate(xoff=100, yoff=50)

# Geometric properties
areas = gdf.geometry.area           # Use projected CRS for accuracy
lengths = gdf.geometry.length       # Perimeter for polygons
is_valid = gdf.geometry.is_valid    # Validate geometry
total = gdf.geometry.total_bounds   # [minx, miny, maxx, maxy]

4. Spatial Analysis

# Spatial join (combine datasets by spatial relationship)
joined = gpd.sjoin(points_gdf, polygons_gdf, predicate='intersects')
joined = gpd.sjoin(gdf1, gdf2, predicate='within')
joined = gpd.sjoin(gdf1, gdf2, predicate='contains', how='left')

# Nearest neighbor join
nearest = gpd.sjoin_nearest(gdf1, gdf2, max_distance=1000, distance_col='dist')

# Overlay operations (set-theoretic)
intersection = gpd.overlay(gdf1, gdf2, how='intersection')
union = gpd.overlay(gdf1, gdf2, how='union')
difference = gpd.overlay(gdf1, gdf2, how='difference')
sym_diff = gpd.overlay(gdf1, gdf2, how='symmetric_difference')

# Dissolve (aggregate by attribute)
dissolved = gdf.dissolve(by='region', aggfunc='sum')
dissolved = gdf.dissolve(by='region', aggfunc={'population'
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