/paper-compilation
Compile LaTeX papers to PDF with automatic error detection, chktex style checking, and citation/reference validation. Runs the full pdflatex + bibtex pipeline. Use when the user wants to compile a paper, fix compilation errors, or debug LaTeX.
$ npx -y skills add lingzhi227/agent-research-skills --skill paper-compilation --agent claude-codeHow it fires
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/paper-compilation
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Compile LaTeX papers to PDF with automatic error detection, chktex style checking, and citation/reference validation. Runs the full pdflatex + bibtex pipeline. Use when the user wants to compile a paper, fix compilation errors, or debug LaTeX.
SKILL.md
paper-compilation.SKILL.mdname: paper-compilation
description: Compile LaTeX papers to PDF with automatic error detection, chktex style checking, and citation/reference validation. Runs the full pdflatex + bibtex pipeline. Use when the user wants to compile a paper, fix compilation errors, or debug LaTeX.
argument-hint: [tex-file-path]
Paper Compilation
Compile a LaTeX paper to PDF with error detection and correction.
Input
- `$ARGUMENTS` — Path to the main `.tex` file
Scripts
Compile paper
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex --check-style
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex --output paper/output.pdf
Reports: compilation status, page count, warnings, citation/reference stats, style issues.
Validate citations before compiling
python ~/.claude/skills/citation-management/scripts/validate_citations.py \
--tex paper/main.tex --bib paper/references.bib --check-figures --figures-dir paper/figures/
Auto-fix LaTeX errors
python ~/.claude/skills/paper-compilation/scripts/fix_latex_errors.py \
--tex paper/main.tex --log compile.log --output paper/main_fixed.tex
Fixes: HTML tags in LaTeX, mismatched environments, missing figures. Key flags: `--dry-run`, `--auto-detect`
Compile with auto-fix retry
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex --auto-fix
Runs fix_latex_errors.py + recompile up to 3 rounds until compilation succeeds.
Workflow
Step 1: Pre-Compilation Validation
Run `validate_citations.py` to catch issues before compiling:
- Every `\cite{key}` has a matching `.bib` entry
- Every `\includegraphics{file}` exists
- No duplicate labels or sections
Step 2: Compile
Run `compile_paper.py` which executes: `pdflatex → bibtex → pdflatex → pdflatex`
Step 3: Error Correction Loop (up to 5 rounds)
If compilation fails, read the error output and fix:
- `! Undefined control sequence` → Add missing package or fix typo
- `! Missing $ inserted` → Wrap math in `$...$`
- `! Missing } inserted` → Fix unmatched brace
- `Citation 'key' undefined` → Add to .bib or fix `\cite`
- `</end{figure}>` → Replace with `\end{figure}` (HTML syntax in LaTeX)
Apply minimal fixes. Do not remove packages unnecessarily. Recompile after each fix.
Step 4: Post-Compilation Report
Check: page count vs venue limit, remaining warnings, chktex style issues.
Troubleshooting
pdflatex not found
# macOS
brew install --cask mactex-no-gui
# Ubuntu
sudo apt install texlive-full
Alternative: latexmk (auto-handles multiple passes)
latexmk -pdf -interaction=nonstopmode main.tex
Related Skills
- Upstream: [latex-formatting](../latex-formatting/), [citation-management](../citation-management/), [figure-generation](../figure-generation/), [table-generation](../table-generation/)
- Downstream: [self-review](../self-review/)
- See also: [paper-assembly](../paper-assembly/)
Read more
name: paper-compilation description: Compile LaTeX papers to PDF with automatic error detection, chktex style checking, and citation/reference validation. Runs the full pdflatex + bibtex pipeline. Use when the user wants to compile a paper, fix compilation errors, or debug LaTeX. argument-hint: [tex-file-path]
Paper Compilation
Compile a LaTeX paper to PDF with error detection and correction.
Input
- `$ARGUMENTS` — Path to the main `.tex` file
Scripts
Compile paper
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex --check-style python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex --output paper/output.pdf
Reports: compilation status, page count, warnings, citation/reference stats, style issues.
Validate citations before compiling
python ~/.claude/skills/citation-management/scripts/validate_citations.py \ --tex paper/main.tex --bib paper/references.bib --check-figures --figures-dir paper/figures/
Auto-fix LaTeX errors
python ~/.claude/skills/paper-compilation/scripts/fix_latex_errors.py \ --tex paper/main.tex --log compile.log --output paper/main_fixed.tex
Fixes: HTML tags in LaTeX, mismatched environments, missing figures. Key flags: `--dry-run`, `--auto-detect`
Compile with auto-fix retry
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex --auto-fix
Runs fix_latex_errors.py + recompile up to 3 rounds until compilation succeeds.
Workflow
Step 1: Pre-Compilation Validation
Run `validate_citations.py` to catch issues before compiling:
- Every `\cite{key}` has a matching `.bib` entry
- Every `\includegraphics{file}` exists
- No duplicate labels or sections
Step 2: Compile
Run `compile_paper.py` which executes: `pdflatex → bibtex → pdflatex → pdflatex`
Step 3: Error Correction Loop (up to 5 rounds)
If compilation fails, read the error output and fix:
- `! Undefined control sequence` → Add missing package or fix typo
- `! Missing $ inserted` → Wrap math in `$...$`
- `! Missing } inserted` → Fix unmatched brace
- `Citation 'key' undefined` → Add to .bib or fix `\cite`
- `</end{figure}>` → Replace with `\end{figure}` (HTML syntax in LaTeX)
Apply minimal fixes. Do not remove packages unnecessarily. Recompile after each fix.
Step 4: Post-Compilation Report
Check: page count vs venue limit, remaining warnings, chktex style issues.
Troubleshooting
pdflatex not found
# macOS brew install --cask mactex-no-gui # Ubuntu sudo apt install texlive-full
Alternative: latexmk (auto-handles multiple passes)
latexmk -pdf -interaction=nonstopmode main.tex
Related Skills
- Upstream: [latex-formatting](../latex-formatting/), [citation-management](../citation-management/), [figure-generation](../figure-generation/), [table-generation](../table-generation/)
- Downstream: [self-review](../self-review/)
- See also: [paper-assembly](../paper-assembly/)
31 skills for Claude Code covering the full academic research paper lifecycle — from literature search to slide generation — plus GitHub repository analysis for research topics. Extracted from 17 GitHub repos studying LLM-agent-driven research automation.
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Make every number in the final PDF traceable to the exact code line that produced it. Uses \hypertarget/\hyperlink LaTeX commands and \num{formula} evaluated at compile time. Use for reproducibility and data integrity verification.
Open skill - /citation-management
Manage BibTeX citations for LaTeX papers. Harvest missing citations from a draft using Semantic Scholar, validate cite keys against .bib files, deduplicate entries, and format bibliography. Use when working with references, BibTeX, or citations.
Open skill - /code-debugging
Debug experiment code with structured error analysis. Categorize errors, apply targeted fixes with retry logic, and use reflection to prevent recurring issues. Use when experiment code fails or produces incorrect results.
Open skill - /data-analysis
Generate statistical analysis code with 4-round review. Select appropriate statistical tests, interpret results, and produce analysis reports with p-values, effect sizes, and confidence intervals. Use when analyzing experimental data for a paper.
Open skill

