academic-researcher
Academic research assistant for literature reviews, paper analysis, and scholarly writing.
Creates implementation plan, writes project code with judge feedback loop, and submits final experiment run.
$ npx -y skills add LigphiDonk/Oh-my--paper --skill inno-experiment-dev --agent claude-codeHow it fires
How this skill gets triggered: by you, by Claude, or both.
/inno-experiment-devContext preview
The summary Claude sees to decide when to auto-load this skill.
Creates implementation plan, writes project code with judge feedback loop, and submits final experiment run.
id: inno-experiment-dev name: inno-experiment-dev version: 1.0.0 description: |- Creates implementation plan, writes project code with judge feedback loop, and submits final experiment run. stages: ["experiment"] tools: ["read_file", "search_project", "write_file"] summary: |- Creates implementation plan, writes project code with judge feedback loop, and submits final experiment run. Use after code-survey in both Idea and Plan branches. primaryIntent: experiment intents: ["experiment"] capabilities: ["research-planning"] domains: ["general"] keywords: ["inno-experiment-dev", "experiment dev", "research-planning", "inno", "experiment", "dev", "creates", "implementation", "plan", "writes", "project", "code"] source: builtin status: verified upstream: repo: dr-claw path: skills/inno-experiment-dev revision: 8322dc4ef575affaa374aa7922c0a0971c6db7d7 resourceFlags: hasReferences: true hasScripts: false hasTemplates: false hasAssets: false referenceCount: 3 scriptCount: 0 templateCount: 0 assetCount: 0 optionalScripts: false
Creates implementation plan, writes project code with judge feedback loop, and submits final experiment run. Use after code-survey in both Idea and Plan branches.
Use this skill when the user request matches its research workflow scope. Prefer the bundled resources instead of recreating templates or reference material. Keep outputs traceable to project files, citations, scripts, or upstream evidence.
Merges the former `inno-implementation-plan`, `inno-ml-dev-iteration`, and the submit step of `inno-experiment-submit-refine`. Mirrors `_create_implementation_plan` (830-858), `_implement_and_iterate` (861-920), and the submit portion of `_submit_and_refine_experiments` (922-945) in `run_infer_idea_ours.py`.
| Variable | Source | Description | |----------|--------|-------------| | `survey_res` | inno-idea-generation or user | The finalized selected idea (or `refined_for_downstream`) | | `references` | pipeline config | Pre-formatted string of source papers | | `updated_prepare_res` | inno-prepare-resources | JSON with `reference_codebases` and `reference_paths` | | `code_survey_res` | inno-code-survey | Comprehensive implementation report / model survey notes | | `dataset_description` | from prepare step / context | Description of available datasets (not in instance.json) | | `core_code` | instance.json `Experiment.core_code` | Absolute path when created by Dr. Claw (e.g. `<project_path>/Experiment/core_code`); use as-is or resolve with `path.join(project_path, value)` if relative | | `code_references` | instance.json `Experiment.code_references` | Absolute path when created by Dr. Claw (e.g. `<project_path>/Experiment/code_references`); use as-is or resolve if relative | | `max_iter_times` | pipeline config | Max judge-iteration rounds (default 2) | | `context_variables` | shared state | Mutable dict carrying state across agents |
Plan mode additionally uses `ideas` and survey-specific prompt variants (`build_plan_query_with_survey`, `build_iteration_query_for_plan`, etc.).
| Variable | Description | |----------|-------------| | `plan_res` | Detailed implementation plan with dataset, model, training, and testing sections | | `ml_dev_res` | Final ML Agent implementation result | | `judge_res` | Final Judge Agent feedback | | `judge_messages` | Full conversation thread (preserved for inno-experiment-analysis) | | `submit_res` | Experiment submission result with statistical outputs | | `context_variables` | Updated with `dataset_plan`, `training_plan`, `testing_plan`, `suggestion_dict`, `raw_error_stats` |
| File | Agent | Content | |------|-------|---------| | `Experiment/core_code/logs/coding_plan_agent.json` | Coding Plan Agent | `context_variables` + `messages` from planning phase | | `Experiment/core_code/logs/machine_learning_agent.json` | ML Agent | Initial implementation messages (+ `_iter_{N}.json` for judge iterations) | | `Experiment/core_code/logs/judge_agent.json` | Judge Agent | Evaluation messages (+ `_iter_{N}.json` for iterations) | | `Experiment/core_code/logs/machine_learning_agent_iter_submit.json` | ML Agent | Submission run messages and results |
Mirrors `_create_implementation_plan`.
1. **Optional pre-step (Idea mode only)**: If refining the idea for implementation clarity, call the idea refinement agent to produce `refined_for_downstream` with tensor interfaces and forward-pass sketch.
2. **Build plan query**:
3. **Call Coding Plan Agent** with `messages = [{"role": "user", "content": plan_query}]`.
4. **Verify** the plan has clear sections: dataset, mod
A Claude Code plugin that turns your terminal into an autonomous research lab — literature survey, experiment execution, paper writing, all in one pipeline.
Academic research assistant for literature reviews, paper analysis, and scholarly writing.
This skill should be used when the user asks to "run initial analysis", "analyze single-cell data", "QC my data", "run…