/run

name: run
description: Sustained metric-improvement loop with atomic commits, auto-rollback, and experiment logging. Iterates with specialist agents, commits atomically, auto-rolls back on regression. Accepts a program.md file path. Supports --resume, --team, --colab, --codex, --researcher, --architect, --journal, --hypothesis.
argument-hint: <program.md> [clarification] [--resume <program.md>] [--team] [--compute=local|colab|docker] [--colab[=H100|L4|T4|A100]] [--codex] [--researcher] [--architect] [--journal] [--hypothesis <path>] [--scientist] [--codemap] [--no-codemap] [--keep "<items>"]
effort: xhigh
allowed-tools: Read, Write, Edit, Bash, Grep, Glob, Agent, TaskCreate, TaskUpdate, AskUserQuestion
disable-model-invocation: true

<objective>

Sustained metric-improvement loop — reads `program.md`, iterates specialist ideation agents, commits atomically, auto-rolls back on regression. For long-running automated improvement campaigns.

NOT for: methodology validation before run (use `/research:judge`); hypothesis generation (use `research:scientist` agent); one-off feature work (use `/develop:feature`).

</objective>

<constants>

Campaign mode only:

MAX_ITERATIONS:             50 (hard cap); DEFAULT 20 when max_iterations unset in program.md; program.md may raise up to 50; values above 50 clamped to 50 with a warning
MAX_CODEX_RUNS:             10 (cost ceiling for --codex Phase 2c — disable Codex once exceeded)
STUCK_THRESHOLD:            5 consecutive discards → escalation
GUARD_REWORK_MAX:           2 attempts before revert
VERIFY_TIMEOUT_SEC:         120 (local), 300 (--colab)
COLAB_KNOWN_HW:             H100, L4, T4, A100
SUMMARY_INTERVAL:           10 iterations
DIMINISHING_RETURNS_WINDOW: 5 iterations < 0.5% each → warn user and suggest stopping
STATE_DIR:                  .experiments/state/<run-id>/  (timestamped dir per run — see .claude/rules/foundry-artifact-lifecycle.md)
SENTINEL_SLUG_FORMULA: |
  eval "$(bash "${CLAUDE_PLUGIN_ROOT:-plugins/cc_research}/bin/git_slugs.sh")"
  # Sentinel path: ${TMPDIR:-/tmp}/claude-commit-auth-${REPO_SLUG}-${BRANCH_SLUG}  # tmpdir-exempt: user-shell-boundary
  # Bash state is lost between tool calls — re-source git_slugs.sh at each use site; it is the only authorized slug form.

<!-- Note: STATE_DIR (.experiments/state/) holds per-iteration artifacts (diary, experiments.jsonl). Hypothesis pipeline outputs (hypotheses.jsonl, checkpoint.json, journal.md) go to .experiments/<run-id>/ (RUN_DIR). These are two separate directories by design — see protocol.md for layout. -->

<!-- policy-sibling: run/modes/colab-setup.md, plan/SKILL.md, sweep/SKILL.md:4, judge/SKILL.md — COLAB_KNOWN_HW set restated in each; keep in sync (plugins/CLAUDE.md §Policy Duplication Marker). -->

**Agent strategy mapping** (`agent_strategy` in config → ideation agent to spawn):

| `agent_strategy` | Specialist agent | When to use | | -- | -- | -- | | `auto` | heuristic | Default — infer from metric_cmd keywords | | `perf` | `foundry:perf-optimizer` | latency, throughput, memory, GPU utilization | | `code` | `foundry:sw-engineer` | coverage, complexity, lines, coupling | | `ml` | `research:scientist` | accuracy, loss, F1, AUC, BLEU | | `arch` | `foundry:solution-architect` | coupling, cohesion, modularity metrics |

**Auto-inference keyword heuristics** (when `agent_strategy: auto` or omitted; checked against `## Goal` text AND metric command):

**Precedence order** (first match wins; ML keywords beat test-framework keywords). ML-specific compound terms (not bare tokens) required — prevents over-triggering on `eval`/`train`/`val` as common words:

• contains `accuracy`, `loss` (paired with `train_loss`/`val_loss`/`eval_loss`), `f1_score`, `auc_roc`, `auroc`, `train_step`, `val_acc`, `eval_loss`, `epoch`, `gradient`, `tensor`, `overfit`, `generaliz`, `regulariz`, `validation`, `dropout`, `weight_decay`, `lr_schedule`, `cross_val`, `precision`, `recall`, OR explicit `--scientist` flag → `ml` → `research:scientist`
• contains `time`, `latency`, `bench`, `throughput`, `memory` → `perf` → `foundry:perf-optimizer`
• contains `pytest`, `coverage`, `complexity` → `code` → `foundry:sw-engineer`
• no keyword match → `perf` (default fallback) — **WARN**: print `⚠ No keyword match — defaulting to 'perf' strategy. If this is an ML task, set agent_strategy: ml in program.md.` Log resolved agent + reason in state.json `strategy_resolution`.

Bare tokens `eval`, `train`, `val` (without compound suffix) do NOT trigger `ml` routing — too common in non-ML contexts (test eval scripts, training-environment configs, validator command names).

**Stuck escalation sequence** (at STUCK_THRESHOLD consecutive discards):

1. Switch agent type. Rotation by current strategy:

| Current strategy | Next strategy | Escalation agent | | -- | -- | -- | | `code` | `ml` | `research:scientist` | | `ml` | `perf` | `foundry:perf-optimizer` | | `perf` | `code` | `foundry:sw-engineer` | | `arch` | `code` | `foundry:sw-engineer` (fallback `foundry:solution-architect` if sw-engineer unavailable) | | `auto` | infer from resolved strategy | follow rotation row for whichever concrete strategy `auto` heuristics resolved to at Step R3 (e.g. `auto` → resolved `ml` → next `perf` → `foundry:perf-optimizer`) |

2. Spawn 2 agents parallel, competing strategies; each writes full analysis to `.experiments/state/<run-id>/stuck-escalation-<i>-<agent-type>.md`, returns ONLY compact JSON envelope. Use this spawn prompt verbatim (substitute `<run-id>`, `<i>`, and strategy):

   Stuck-escalation handoff — iteration <i> after STUCK_THRESHOLD consecutive discards.
   Read `.experiments/state/<run-id>/state.json` for goal, best_metric, baseline, config.
   Read `.experiments/state/<run-id>/experiments.jsonl` for full iteration history.
   Read `.experiments/state/<run-id>/diary.md` for qualitative context (what was tried, why reverted).
   Read `.experiments/state/<run-id>/