instrument-data-to-all…
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D…
Use when a developer wants to deploy an HCLS agent to Amazon Bedrock AgentCore, configure Gateway tools as MCP endpoints, set up authentication with Cognito, configure memory, or register an agent in the AgentCore Registry. Also use for deployment troubleshooting.
$ npx -y skills add aws-samples/amazon-bedrock-agents-healthcare-lifesciences --skill hcls-deploy-agent --agent claude-codeHow it fires
How this skill gets triggered: by you, by Claude, or both.
/hcls-deploy-agentContext preview
The summary Claude sees to decide when to auto-load this skill.
Use when a developer wants to deploy an HCLS agent to Amazon Bedrock AgentCore, configure Gateway tools as MCP endpoints, set up authentication with Cognito, configure memory, or register an agent in the AgentCore Registry. Also use for deployment troubleshooting.
name: hcls-deploy-agent description: Use when a developer wants to deploy an HCLS agent to Amazon Bedrock AgentCore, configure Gateway tools as MCP endpoints, set up authentication with Cognito, configure memory, or register an agent in the AgentCore Registry. Also use for deployment troubleshooting.
AgentCore Deployment ├── Runtime — Hosts the agent container ├── Gateway — Exposes tools as MCP endpoints (Lambda targets) ├── Memory — Conversation persistence (semantic, summary, preferences) ├── Identity — Cognito OAuth2 authentication └── Registry — Agent discovery for multi-agent workflows
# Install AgentCore CLI pip install bedrock-agentcore # Configure agentcore configure --entrypoint main.py \ -rf agent/requirements.txt \ -er <IAM_ROLE_ARN> \ --name <agent-name>
Run the prerequisite script (creates Lambda tools, Cognito, Gateway):
./scripts/prereq.sh
This deploys CloudFormation stacks for:
# Remove stale config rm -f .agentcore.yaml # Launch (builds container, pushes to ECR, deploys to Runtime) agentcore launch
# Invoke the deployed agent
agentcore invoke '{"prompt": "Hello, can you help me?"}'
# Test Gateway tools independently
python tests/test_gateway.py --prompt "Test query"
# Test memory
python tests/test_memory.py load-conversationFor multi-agent discovery, register the agent:
import boto3
client = boto3.client('bedrock-agentcore')
client.create_registry_record(
registryName="hcls-registry",
recordName="<agent-name>",
description="<rich description for semantic search>",
descriptorType="MCP", # or "A2A" for agent-to-agent
descriptors={...}
)| Template | What it deploys | |----------|----------------| | `agentcore_template/` | Backend: Runtime + Gateway + Memory + Streamlit UI | | [FAST](https://github.com/awslabs/fullstack-solution-template-for-agentcore) | Full-stack: React/Amplify + Cognito + AgentCore + CDK |
When deploying, the following AWS MCP servers help:
A library of healthcare and life sciences domain capabilities — reference agents with best practices, reusable skills, and MCP-based tools — serving builders in their IDEs, researchers in Amazon Quick, and developers deploying to AWS.
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D…
This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck…
Use when a researcher needs to query biomedical databases for biomarker discovery, build target profiles from UniProt/Open…
Use when orchestrating a multi-agent biomarker discovery workflow that requires coordinating database queries, pathway analysis,…
Use when a researcher needs to analyze biological pathways for biomarker discovery, map disease mechanisms to druggable targets…
Use when drafting clinical trial protocol sections (objectives, background, study design) grounded in ICH guidelines (E6, E8, E9)…