academic-aio
Use when a medical AI paper should be found and cited by AI search engines and RAG tools. Optimizes the title, abstract, summary…
Use when a manuscript needs a copy-edit for consistency and non-native English clarity. Flags abbreviation, US/UK spelling, en-dash range, P/p, hyphenation, number-style and unit-spacing issues, then polishes style only. AI-tell removal is /humanize.
$ npx -y skills add Aperivue/medsci-skills --skill polish-language --agent claude-codeHow it fires
How this skill gets triggered: by you, by Claude, or both.
/polish-languageContext preview
The summary Claude sees to decide when to auto-load this skill.
Use when a manuscript needs a copy-edit for consistency and non-native English clarity. Flags abbreviation, US/UK spelling, en-dash range, P/p, hyphenation, number-style and unit-spacing issues, then polishes style only. AI-tell removal is /humanize.
name: polish-language description: Use when a manuscript needs a copy-edit for consistency and non-native English clarity. Flags abbreviation, US/UK spelling, en-dash range, P/p, hyphenation, number-style and unit-spacing issues, then polishes style only. AI-tell removal is /humanize. metadata: triggers: "polish language, copy-edit, consistency check, ESL, non-native English, house style, abbreviation consistency, en-dash, US UK spelling, proofread manuscript, 일관성 검사, 교정"
Tighten a manuscript's **mechanical language consistency and clarity** before circulation or submission — the copy-editor pass content-focused skills skip. The author is often a non-native (ESL) English writer, so clarity edits keep the formal academic register and never touch facts. Manuscript edits are in English.
This skill **never** rewrites scientific claims, changes numeric values, edits citations, or judges study quality; it standardizes house style and improves sentence-level clarity, with explicit user approval for every edit. Out of scope: AI-tell removal (`humanize`, which does not do general copy-editing), drafting or restructuring (`write-paper`), reporting-guideline items (`check-reporting`), AI-search optimization (`academic-aio`), reference formatting and citation integrity (`manage-refs`, `verify-refs`), and translation.
**Input**: a manuscript or section (Markdown / plain text). **Output**: (1) the deterministic consistency report, and (2) — only after a user gate — a clarity-polished revision with a change log limited to style.
Run the bundled linter — it reports, never edits:
python3 "${CLAUDE_SKILL_DIR}/scripts/lint_consistency.py" path/to/manuscript.md
# add --strict to exit non-zero when any issue is found (CI / pre-submission gate)It flags eight families, each with line numbers and a per-category + total count:
1. **Abbreviations** — used-before-defined, defined-but-unused, defined-twice, used-but-never-defined (define-once discipline). 2. **Spelling** — mixed US/UK variants (analyze/analyse, tumor/tumour, …); reports the minority side against the document's dominant variant. 3. **Numeric ranges** — hyphen between numbers where an en-dash belongs (`5-10` → `5–10`). 4. **p-values** — mixed `P`/`p` case; impossible `P = 0.000`. 5. **Hyphenation / terminology** — variant forms of one term (follow-up / followup / "follow up"). 6. **Small numbers** — single digits 1–9 written as digits in prose. 7. **Units** — missing space between value and unit (`5mg` → `5 mg`). 8. **Thousands separator (title vs body)** — a float title writes a number with a period separator (`3.681`) that the body writes with a comma (`3,681`).
Present the report to the user. The linter output is the source of truth for what is mechanically wrong: do not invent further "issues" from memory, and label anything else you notice as an editorial suggestion, not a linter finding. The fixed rules do not settle every grammar or journal preference, so triage flags in context.
Text baked into a figure never reaches Phase 1, so a UK word typed into a PowerPoint panel or plotting script ships in a US manuscript unseen. Scan the figure **sources** (no OCR):
python3 "${CLAUDE_SKILL_DIR}/scripts/lint_figure_locale.py" --manuscript path/to/manuscript.md --figures-dir figures/
# --spelling us|uk forces the target; otherwise it reads a `spelling:` front-matter field,
# then falls back to the body's own US/UK majority. --strict exits non-zero on any drift.It reads `<a:t>` runs inside `*.pptx` slide XML and the text of `*.py` / `*.R` plotting scripts, with the same US↔UK families as Phase 1. `FIGURE_LOCALE_DRIFT` is **Minor** — copy-edit the source before the raster is re-exported. A missing figures directory is not an error; it exits 0 with nothing judged.
Walk the user through the report. Some flags are author choices (a journal may mandate UK spelling, or digits for all numbers). **User approval is required** before any edit — confirm per category which to apply and which to keep. Record the decisions; do not auto-apply.
For each **approved** category, apply the deterministic fix with `Edit`:
Re-run `lint_consistency.py` after editing — the count should drop to the issues the user chose to keep. This re-run is the verification gate; never claim a fix without it.
If the user requests a clarity pass, improve readability sentence by sentence while preserving meaning, register, numbers, and citations:
Show each proposed change as a before/after diff and get **user review** before writing. Numbers, p-values, effect sizes, units, citations, and claims are copied verbatim; an edit that would change any of them is out of scope — skip it. Never merge, add, or drop a scientific claim, number, or reference. If a sentence's meaning is even slightly uncertain, leave it and ask; do not invent domain facts to smooth a sentence. Every applied change must trace to a linter flag or a user-approved clarity suggestion in the change log.
Deterministic and network-free (synthetic manuscript with seeded defects + `expected/report.txt`):
bash "${CLAUDE_SKILL_DIR}/scrCreated & maintained by Yoojin Nam, MD Department of Radiology and Research Institute of Radiology, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea MedSci Skills is a set of Agent Skills for clinical research: literature
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