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Full-stack diagnostic for agent and LLM applications. Audits the 12-layer agent stack for wrapper regression, memory pollution, tool discipline failures, hidden repair loops, and rendering corruption. Produces severity-ranked findings with code-first fixes. Essential for

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SKILL.md

agent-architecture-audit.SKILL.md
name: agent-architecture-audit
description: Full-stack diagnostic for agent and LLM applications. Audits the 12-layer agent stack for wrapper regression, memory pollution, tool discipline failures, hidden repair loops, and rendering corruption. Produces severity-ranked findings with code-first fixes. Essential for developers building agent applications, autonomous loops, or any LLM-powered feature. Use when an agent or LLM feature misbehaves and the failing layer is unknown, or before shipping an agent stack.
metadata:
  origin: oh-my-agent-check
tools: Read, Write, Edit, Bash, Grep, Glob

Agent Architecture Audit

A diagnostic workflow for agent systems that hide failures behind wrapper layers, stale memory, retry loops, or transport/rendering mutations.

When to Activate

**MANDATORY for:**

  • Releasing any agent or LLM-powered application to production
  • Shipping features with tool calling, memory, or multi-step workflows
  • Agent behavior degrades after adding wrapper layers
  • User reports "the agent is getting worse" or "tools are flaky"
  • Same model works in playground but breaks inside your wrapper
  • Debugging agent behavior for more than 15 minutes without finding root cause

**Especially critical when:**

  • You've added new prompt layers, tool definitions, or memory systems
  • Different agents in your system behave inconsistently
  • The model was fine yesterday but is hallucinating today
  • You suspect hidden repair/retry loops silently mutating responses

**Do not use for:**

  • General code debugging — use `agent-introspection-debugging`
  • Code review — use language-specific reviewer agents
  • Security scanning — use `security-review` or `security-review/scan`
  • Agent performance benchmarking — use `agent-eval`
  • Writing new features — use the appropriate workflow skill

The 12-Layer Stack

Every agent system has these layers. Any of them can corrupt the answer:

| # | Layer | What Goes Wrong | |---|-------|----------------| | 1 | System prompt | Conflicting instructions, instruction bloat | | 2 | Session history | Stale context injection from previous turns | | 3 | Long-term memory | Pollution across sessions, old topics in new conversations | | 4 | Distillation | Compressed artifacts re-entering as pseudo-facts | | 5 | Active recall | Redundant re-summary layers wasting context | | 6 | Tool selection | Wrong tool routing, model skips required tools | | 7 | Tool execution | Hallucinated execution — claims to call but doesn't | | 8 | Tool interpretation | Misread or ignored tool output | | 9 | Answer shaping | Format corruption in final response | | 10 | Platform rendering | Transport-layer mutation (UI, API, CLI mutates valid answers) | | 11 | Hidden repair loops | Silent fallback/retry agents running second LLM pass | | 12 | Persistence | Expired state or cached artifacts reused as live evidence |

Common Failure Patterns

1. Wrapper Regression

The base model produces correct answers, but the wrapper layers make it worse.

**Symptoms:**

  • Model works fine in playground or direct API call, breaks in your agent
  • Added a new prompt layer, existing behavior degraded
  • Agent sounds confident but is confidently wrong
  • "It was working before the last update"

2. Memory Contamination

Old topics leak into new conversations through history, memory retrieval, or distillation.

**Symptoms:**

  • Agent brings up unrelated past topics
  • User corrections don't stick (old memory overwrites new)
  • Same-session artifacts re-enter as pseudo-facts
  • Memory grows without bound, degrading response quality over time

3. Tool Discipline Failure

Tools are declared in the prompt but not enforced in code. The model skips them or hallucinates execution.

**Symptoms:**

  • "Must use tool X" in prompt, but model answers without calling it
  • Tool results look correct but were never actually executed
  • Different tools fight over the same responsibility
  • Model uses tool when it shouldn't, or skips it when it must

4. Rendering/Transport Corruption

The agent's internal answer is correct, but the platform layer mutates it during delivery.

**Symptoms:**

  • Logs show correct answer, user sees broken output
  • Markdown rendering, JSON parsing, or streaming fragments corrupt valid responses
  • Hidden fallback agent quietly replaces the answer before delivery
  • Output differs between terminal and UI

5. Hidden Agent Layers

Silent repair, retry, summarization, or recall agents run without explicit contracts.

**Symptoms:**

  • Output changes between internal generation and user delivery
  • "Auto-fix" loops run a second LLM pass the user doesn't know about
  • Multiple agents modify the same output without coordination
  • Answers get "smoothed" or "corrected" by invisible layers

Audit Workflow

Phase 1: Scope

Define what you're auditing:

  • **Target system** — what agent application?
  • **Entrypoints** — how do users interact with it?
  • **Model stack** — which LLM(s) and providers?
  • **Symptoms** — what does the user report?
  • **Time window** — when did it start?
  • **Layers to audit** — which of the 12 layers apply?

Phase 2: Evidence Collection

Gather evidence from the codebase:

  • **Source code** — agent loop, tool router, memory admission, prompt assembly
  • **Logs** — historical session traces, tool call records
  • **Config** — prompt templates, tool schemas, provider settings
  • **Memory files** — SOPs, knowledge bases, session archives

Use `rg` to search for anti-patterns:

# Tool requirements expressed only in prompt text (not code)
rg "must.*tool|必须.*工具|required.*call" --type md

# Tool execution without validation
rg "tool_call|toolCall|tool_use" --type py --type ts

# Hidden LLM calls outside main agent loop
rg "completion|chat\.create|messages\.create|llm\.invoke"

# Memory admission without user-correction priority
rg "memory.*admit|long.*term.*update|persist.*memory" --type py --type ts

# Fallback loops that run additional LLM calls
rg "fallback|retry.*llm|r
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agent-architecture-audit installs in Claude Code, Codex, Cursor, Gemini CLI, GitHub Copilot, OpenCode and Windsurf with the skills CLI, using each agent's flag shown on this page. Flowy's auto-invocation, which fires a skill when your prompt matches, runs in Claude Code only.