/r-oop
R object-oriented programming guide for S7, S3, S4, and vctrs. Use when designing R classes or choosing an OOP system.
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R object-oriented programming guide for S7, S3, S4, and vctrs. Use when designing R classes or choosing an OOP system.
SKILL.md
r-oop.SKILL.mdname: r-oop
description: R object-oriented programming guide for S7, S3, S4, and vctrs. Use when designing R classes or choosing an OOP system.
R Object-Oriented Programming
*S7, S3, S4, and vctrs: choosing the right OOP system for your needs*
S7: Modern OOP for New Projects
- **S7 combines S3 simplicity with S4 structure**
- **Formal class definitions with automatic validation**
- **Compatible with existing S3 code**
# S7 class definition
Range <- new_class("Range",
properties = list(
start = class_double,
end = class_double
),
validator = function(self) {
if (self@end < self@start) {
"@end must be >= @start"
}
}
)
# Usage - constructor and property access
x <- Range(start = 1, end = 10)
x@start # 1
x@end <- 20 # automatic validation
# Methods
inside <- new_generic("inside", "x")
method(inside, Range) <- function(x, y) {
y >= x@start & y <= x@end
}OOP System Decision Matrix
S7 vs vctrs vs S3/S4 Decision Tree
**Start here:** What are you building?
1. Vector-like objects (things that behave like atomic vectors)
Use vctrs when:
- Need data frame integration (columns/rows)
- Want type-stable vector operations
- Building factor-like, date-like, or numeric-like classes
- Need consistent coercion/casting behavior
- Working with existing tidyverse infrastructure
Examples: custom date classes, units, categorical data
2. General objects (complex data structures, not vector-like)
Use S7 when:
- NEW projects that need formal classes
- Want property validation and safe property access (@)
- Need multiple dispatch (beyond S3's double dispatch)
- Converting from S3 and want better structure
- Building class hierarchies with inheritance
- Want better error messages and discoverability
Use S3 when:
- Simple classes with minimal structure needs
- Maximum compatibility and minimal dependencies
- Quick prototyping or internal classes
- Contributing to existing S3-based ecosystems
- Performance is absolutely critical (minimal overhead)
Use S4 when:
- Working in Bioconductor ecosystem
- Need complex multiple inheritance (S7 doesn't support this)
- Existing S4 codebase that works well
Detailed S7 vs S3 Comparison
| Feature | S3 | S7 | When S7 wins | |---------|----|----|---------------| | **Class definition** | Informal (convention) | Formal (`new_class()`) | Need guaranteed structure | | **Property access** | `$` or `attr()` (unsafe) | `@` (safe, validated) | Property validation matters | | **Validation** | Manual, inconsistent | Built-in validators | Data integrity important | | **Method discovery** | Hard to find methods | Clear method printing | Developer experience matters | | **Multiple dispatch** | Limited (base generics) | Full multiple dispatch | Complex method dispatch needed | | **Inheritance** | Informal, `NextMethod()` | Explicit `super()` | Predictable inheritance needed | | **Migration cost** | - | Low (1-2 hours) | Want better structure | | **Performance** | Fastest | ~Same as S3 | Performance difference negligible | | **Compatibility** | Full S3 | Full S3 + S7 | Need both old and new patterns |
Practical Guidelines
Choose S7 when you have
# Complex validation needs
Range <- new_class("Range",
properties = list(start = class_double, end = class_double),
validator = function(self) {
if (self@end < self@start) "@end must be >= @start"
}
)
# Multiple dispatch needs
method(generic, list(ClassA, ClassB)) <- function(x, y) ...
# Class hierarchies with clear inheritance
Child <- new_class("Child", parent = Parent)Choose vctrs when you need
# Vector-like behavior in data frames
percent <- new_vctr(0.5, class = "percentage")
data.frame(x = 1:3, pct = percent(c(0.1, 0.2, 0.3))) # works seamlessly
# Type-stable operations
vec_c(percent(0.1), percent(0.2)) # predictable behavior
vec_cast(0.5, percent()) # explicit, safe casting
Choose S3 when you have
# Simple classes without complex needs
new_simple <- function(x) structure(x, class = "simple")
print.simple <- function(x, ...) cat("Simple:", x)
# Maximum performance needs (rare)
# Existing S3 ecosystem contributionsS3 Patterns
Basic S3 Class
# Constructor
new_person <- function(name, age) {
stopifnot(is.character(name), length(name) == 1)
stopifnot(is.numeric(age), length(age) == 1)
structure(
list(name = name, age = age),
class = "person"
)
}
# Print method
print.person <- function(x, ...) {
cat("Person:", x$name, "(age", x$age, ")\n")
invisible(x)
}
# Generic + method
greet <- function(x) UseMethod("greet")
greet.person <- function(x) {
cat("Hello, my name is", x$name, "\n")
}
greet.default <- function(x) {
cat("Hello!\n")
}S3 Inheritance
# Child class
new_employee <- function(name, age, company) {
obj <- new_person(name, age)
obj$company <- company
class(obj) <- c("employee", class(obj))
obj
}
# Method with inheritance
print.employee <- function(x, ...) {
NextMethod() # Call parent print method
cat("Works at:", x$company, "\n")
invisible(x)
}S7 Patterns
Basic S7 Class
library(S7)
# Define class
Person <- new_class("Person",
properties = list(
name = class_character,
age = class_numeric
),
validator = function(self) {
if (self@age < 0) {
"@age must be non-negative"
}
}
)
# Create instance
bob <- Person(name = "Bob", age = 30)
bob@name # "Bob"
bob@age <- 31 # Validated assignmentS7 Methods
# Define generic
greet <- new_generic("greet", "x")
# Add method
method(greet, Person) <- function(x) {
cat("Hello, my name is", x@name, "\n")
}
# Default method
method(greet, class_any) <- function(x) {
cat("Hello!\n")
}S7 Inheritance
Employee <- new_class("Employee",
parent = Person,
properties = list(
company = class_character
)
)
# Override method
method(greet, Employee) <- function(x) {
super(x, Person)@gRead more
name: r-oop description: R object-oriented programming guide for S7, S3, S4, and vctrs. Use when designing R classes or choosing an OOP system.
R Object-Oriented Programming
*S7, S3, S4, and vctrs: choosing the right OOP system for your needs*
S7: Modern OOP for New Projects
- **S7 combines S3 simplicity with S4 structure**
- **Formal class definitions with automatic validation**
- **Compatible with existing S3 code**
# S7 class definition
Range <- new_class("Range",
properties = list(
start = class_double,
end = class_double
),
validator = function(self) {
if (self@end < self@start) {
"@end must be >= @start"
}
}
)
# Usage - constructor and property access
x <- Range(start = 1, end = 10)
x@start # 1
x@end <- 20 # automatic validation
# Methods
inside <- new_generic("inside", "x")
method(inside, Range) <- function(x, y) {
y >= x@start & y <= x@end
}OOP System Decision Matrix
S7 vs vctrs vs S3/S4 Decision Tree
**Start here:** What are you building?
1. Vector-like objects (things that behave like atomic vectors)
Use vctrs when: - Need data frame integration (columns/rows) - Want type-stable vector operations - Building factor-like, date-like, or numeric-like classes - Need consistent coercion/casting behavior - Working with existing tidyverse infrastructure Examples: custom date classes, units, categorical data
2. General objects (complex data structures, not vector-like)
Use S7 when: - NEW projects that need formal classes - Want property validation and safe property access (@) - Need multiple dispatch (beyond S3's double dispatch) - Converting from S3 and want better structure - Building class hierarchies with inheritance - Want better error messages and discoverability Use S3 when: - Simple classes with minimal structure needs - Maximum compatibility and minimal dependencies - Quick prototyping or internal classes - Contributing to existing S3-based ecosystems - Performance is absolutely critical (minimal overhead) Use S4 when: - Working in Bioconductor ecosystem - Need complex multiple inheritance (S7 doesn't support this) - Existing S4 codebase that works well
Detailed S7 vs S3 Comparison
| Feature | S3 | S7 | When S7 wins | |---------|----|----|---------------| | **Class definition** | Informal (convention) | Formal (`new_class()`) | Need guaranteed structure | | **Property access** | `$` or `attr()` (unsafe) | `@` (safe, validated) | Property validation matters | | **Validation** | Manual, inconsistent | Built-in validators | Data integrity important | | **Method discovery** | Hard to find methods | Clear method printing | Developer experience matters | | **Multiple dispatch** | Limited (base generics) | Full multiple dispatch | Complex method dispatch needed | | **Inheritance** | Informal, `NextMethod()` | Explicit `super()` | Predictable inheritance needed | | **Migration cost** | - | Low (1-2 hours) | Want better structure | | **Performance** | Fastest | ~Same as S3 | Performance difference negligible | | **Compatibility** | Full S3 | Full S3 + S7 | Need both old and new patterns |
Practical Guidelines
Choose S7 when you have
# Complex validation needs
Range <- new_class("Range",
properties = list(start = class_double, end = class_double),
validator = function(self) {
if (self@end < self@start) "@end must be >= @start"
}
)
# Multiple dispatch needs
method(generic, list(ClassA, ClassB)) <- function(x, y) ...
# Class hierarchies with clear inheritance
Child <- new_class("Child", parent = Parent)Choose vctrs when you need
# Vector-like behavior in data frames percent <- new_vctr(0.5, class = "percentage") data.frame(x = 1:3, pct = percent(c(0.1, 0.2, 0.3))) # works seamlessly # Type-stable operations vec_c(percent(0.1), percent(0.2)) # predictable behavior vec_cast(0.5, percent()) # explicit, safe casting
Choose S3 when you have
# Simple classes without complex needs
new_simple <- function(x) structure(x, class = "simple")
print.simple <- function(x, ...) cat("Simple:", x)
# Maximum performance needs (rare)
# Existing S3 ecosystem contributionsS3 Patterns
Basic S3 Class
# Constructor
new_person <- function(name, age) {
stopifnot(is.character(name), length(name) == 1)
stopifnot(is.numeric(age), length(age) == 1)
structure(
list(name = name, age = age),
class = "person"
)
}
# Print method
print.person <- function(x, ...) {
cat("Person:", x$name, "(age", x$age, ")\n")
invisible(x)
}
# Generic + method
greet <- function(x) UseMethod("greet")
greet.person <- function(x) {
cat("Hello, my name is", x$name, "\n")
}
greet.default <- function(x) {
cat("Hello!\n")
}S3 Inheritance
# Child class
new_employee <- function(name, age, company) {
obj <- new_person(name, age)
obj$company <- company
class(obj) <- c("employee", class(obj))
obj
}
# Method with inheritance
print.employee <- function(x, ...) {
NextMethod() # Call parent print method
cat("Works at:", x$company, "\n")
invisible(x)
}S7 Patterns
Basic S7 Class
library(S7)
# Define class
Person <- new_class("Person",
properties = list(
name = class_character,
age = class_numeric
),
validator = function(self) {
if (self@age < 0) {
"@age must be non-negative"
}
}
)
# Create instance
bob <- Person(name = "Bob", age = 30)
bob@name # "Bob"
bob@age <- 31 # Validated assignmentS7 Methods
# Define generic
greet <- new_generic("greet", "x")
# Add method
method(greet, Person) <- function(x) {
cat("Hello, my name is", x@name, "\n")
}
# Default method
method(greet, class_any) <- function(x) {
cat("Hello!\n")
}S7 Inheritance
Employee <- new_class("Employee",
parent = Person,
properties = list(
company = class_character
)
)
# Override method
method(greet, Employee) <- function(x) {
super(x, Person)@gA curated collection of Claude Code configurations for modern R use. These skills, rules, commands, and agents help Claude Code understand R best practices and generate idiomatic, high-quality R code.
Repo: ab604/claude-code-r-skills
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