An agent is a specialist Claude hands a whole job to, with its own tools and its own context.
65 agents across 675 plugins.
Applies SuperLocalMemory's context-optimization rules — reversible compression of large tool output and KV-caching of repeated reads/searches — to stretch the…
Extracts paper metadata (authors, date, venue, fields, DOI/arxiv ID) and a paper-quality assessment (credibility, experimental rigor, reproducibility) from a…
System Architect subagent for the design-architecture skill. Analyzes overall system design, pipeline orchestration, component boundaries, re-entry points, and…
Execute ENCODE DNase-seq pipeline from FASTQ to hotspots and footprints using BWA, Hotspot2, and HINT (RGT)
Execute ENCODE Hi-C pipeline from FASTQ to contact matrices and loop calls using BWA, pairtools, Juicer, and HiCCUPS
Execute ENCODE RNA-seq pipeline from FASTQ to gene quantification using STAR 2-pass alignment and RSEM/Kallisto
Ingestion pipeline testing convention checker. Use when writing, reviewing, or debugging tests for pipeline steps or pipelines — covers test helpers, assertion…
Use this agent when you need to create, refine, or optimize prompts for LLMs. This includes designing new prompts from scratch, debugging problematic prompts,…
Resource duplication expert - use when configuring a resource to be copied between projects.
Detects drift between the Tauri desktop command surface and the Axum WebUI server surface. Use after a frontend change adds an invoke() call, after a backend…
Architecture specialist for claude-code-history-viewer's typescript code (react). Design-first: produce a grounded proposal, wait for approval, then implement…
Verifies a frontend UI change actually works in a real rendered view before it is reported done — not jsdom, not a snapshot, the real thing. Checks the change…
Execute ENCODE WGBS pipeline from FASTQ to methylation calls using Bismark and MethylDackel
Use this agent when you need to diagnose and fix bugs, errors, or unexpected behavior in code. This includes situations where code is failing with error…
Use this agent when you need to write comprehensive test suites for existing code or when implementing test-driven development. This includes creating unit…
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