/biological-function-mapping
Map technical functions to biological systems. Orchestrates problem-biologization
$ npx -y skills add yogsoth-ai/de-anthropocentric-research-engine --skill biological-function-mapping --agent claude-codeHow it fires
How this skill gets triggered: by you, by Claude, or both.
- Fires itselfAuto-invocation. Claude auto-loads it when your prompt matches the work.Auto-invocation is when the right skill fires by itself at the right moment, driven by a FLOW.md router and a hook, instead of you invoking it by name. It is the difference between a skill being installed and a skill actually getting used.Read the full definition →
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/biological-function-mapping
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The summary Claude sees to decide when to auto-load this skill.
Map technical functions to biological systems. Orchestrates problem-biologization
SKILL.md
biological-function-mapping.SKILL.mdname: biological-function-mapping
description: Map technical functions to biological systems. Orchestrates problem-biologization
→ organism-discovery → functional-model-biology.
execution: tactic
dependencies:
sops:
- functional-model-biology
- organism-discovery
- problem-biologization
Biological Function Mapping
Map technical functions to biological systems via biologize→discover→model pipeline.
Stages
Stage 1: Problem Biologization
Translate the technical problem into a biological function need statement using problem-biologization SOP. Frame in terms of what function nature must achieve, not how.
Stage 2: Organism Discovery
Search for organisms that solve the biologized problem using organism-discovery SOP. Identify champion organisms across multiple phyla/kingdoms for diversity.
Stage 3: Functional Modeling
For each promising organism, build a functional model (energy/matter/information flows) using functional-model-biology SOP. Identify the mechanism that achieves the target function.
Minimum Yield
| Metric | Floor | |--------|-------| | Biological function statements | ≥2 | | Organisms discovered | ≥5 | | Biological systems mapped to technical functions | ≥3 | | Functional models completed | ≥3 |
Available SOPs
| SOP | Role | |-----|------| | problem-biologization | Stage 1 — translate technical→biological | | organism-discovery | Stage 2 — find champion organisms | | functional-model-biology | Stage 3 — build functional models | | biological-strategy-extraction | Post — extract transferable strategies | | web-search | Support — search for biological solutions | | paper-overview | Support — find academic biology sources |
<!-- BEGIN available-tables (generated) -->
Available SOPs
Optional, no fixed order; the final leaf is always a sop.
| SOP | When to use | | --- | --- | | functional-model-biology | Build biological system functional model. Map energy, matter, and information flows. | | organism-discovery | Find organisms solving similar problems. Search across kingdoms for biological champions. | | problem-biologization | Restate technical problem as biological question. Translate engineering challenges into nature's language. |
<!-- END available-tables (generated) -->
Read more
name: biological-function-mapping description: Map technical functions to biological systems. Orchestrates problem-biologization → organism-discovery → functional-model-biology. execution: tactic dependencies: sops: - functional-model-biology - organism-discovery - problem-biologization
Biological Function Mapping
Map technical functions to biological systems via biologize→discover→model pipeline.
Stages
Stage 1: Problem Biologization
Translate the technical problem into a biological function need statement using problem-biologization SOP. Frame in terms of what function nature must achieve, not how.
Stage 2: Organism Discovery
Search for organisms that solve the biologized problem using organism-discovery SOP. Identify champion organisms across multiple phyla/kingdoms for diversity.
Stage 3: Functional Modeling
For each promising organism, build a functional model (energy/matter/information flows) using functional-model-biology SOP. Identify the mechanism that achieves the target function.
Minimum Yield
| Metric | Floor | |--------|-------| | Biological function statements | ≥2 | | Organisms discovered | ≥5 | | Biological systems mapped to technical functions | ≥3 | | Functional models completed | ≥3 |
Available SOPs
| SOP | Role | |-----|------| | problem-biologization | Stage 1 — translate technical→biological | | organism-discovery | Stage 2 — find champion organisms | | functional-model-biology | Stage 3 — build functional models | | biological-strategy-extraction | Post — extract transferable strategies | | web-search | Support — search for biological solutions | | paper-overview | Support — find academic biology sources |
<!-- BEGIN available-tables (generated) -->
Available SOPs
Optional, no fixed order; the final leaf is always a sop.
| SOP | When to use | | --- | --- | | functional-model-biology | Build biological system functional model. Map energy, matter, and information flows. | | organism-discovery | Find organisms solving similar problems. Search across kingdoms for biological champions. | | problem-biologization | Restate technical problem as biological question. Translate engineering challenges into nature's language. |
<!-- END available-tables (generated) -->
The complete research orchestration system for AI-native science. What It Does Design Philosophy Architecture (v3.2.2) Quick Start Configuration Roadmap License DARE is not a tool that helps you do research. It is the researcher.
Repo: yogsoth-ai/de-anthropocentric-research-engine
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