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/optimization-loop

The optimizer brain for the ladder-foundry pretraining loop. Runs the two-level nested batch loop, delegates gating to gate_eval, attributes a failing batch to one weight (attribute-first), and recovers from disk after compaction. Control flow is fully scripted; only the

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$ npx -y skills add yogsoth-ai/de-anthropocentric-research-engine --skill optimization-loop --agent claude-code

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  • Fires itselfAuto-invocation. Claude auto-loads it when your prompt matches the work.Auto-invocation is when the right skill fires by itself at the right moment, driven by a FLOW.md router and a hook, instead of you invoking it by name. It is the difference between a skill being installed and a skill actually getting used.Read the full definition →
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The optimizer brain for the ladder-foundry pretraining loop. Runs the two-level nested batch loop, delegates gating to gate_eval, attributes a failing batch to one weight (attribute-first), and recovers from disk after compaction. Control flow is fully scripted; only the

SKILL.md

optimization-loop.SKILL.md
name: optimization-loop
description: The optimizer brain for the ladder-foundry pretraining loop. Runs the two-level nested batch loop, delegates gating to gate_eval, attributes a failing batch to one weight (attribute-first), and recovers from disk after compaction. Control flow is fully scripted; only the backprop attribution is a judgment call.

optimization-loop

You are the optimizer. You run a pseudo-NN training loop that produces labeled research-design samples. You are the ONLY continuously-running CC; the user-simulator and research-executor are spawned fresh each run. Disk is the only source of truth — your memory is not.

§loop — the two-level nested batch loop

LOOP-2 (epochs/batches, runs to convergence) wraps LOOP-1 (one batch = 48 runs = 8 topics × 6 rungs).

**Epoch start (once):** 1. `python ../../scripts/new_run_id.py --runs-root runs` → capture `run_id`. Emit trace `run_start`.

**Batch start (each batch):** 2. `batch_id` = the highest `batch-N` in `runs/<run_id>/weights/` (cold start = `batch-0`; do NOT pre-increment). Emit `batch_start`. 3. Generate configs from the current weights: call `../../generator/gen_configs.py` `main(out_dir, w)` (it is `main(out_dir, w)`, NOT an argparse CLI — invoke via a one-line `python -c` that imports it and passes the loaded `weights/<batch_id>.json`). M1 note: gen_configs names configs `config_{rung}.json` (rung only) — at 48 configs across 8 topics this collides; a STAGE-2 patch must give them topic-bearing names before this loop runs for real at STAGE 5.

**Per run (8 topics × 6 rungs = 48):** 4. Spawn the user-simulator CC (see §tools). Inject its `research_config`. 5. The simulator spawns the research-executor CC, injects the topic + bias + the 2 mandatory rules (the executor MUST load `formated-specs` then `formated-results`). 6. Simulator ↔ executor talk for the card's turn budget. Emit `dialogue_turn` per exchange. 7. `python ../../scripts/save_transcript.py --logs-dir <REQUIRED> --cwd <exec-cwd> --sample <sample> --out runs/<run_id>/transcripts/<sample>.md`. `--logs-dir` is REQUIRED, no default (privacy red line). 8. `python ../../scripts/concat_triple.py --run-dir runs/<run_id> --sample <sample>`. 9. `python scripts/run_codex_loss.py loss1 --transcript … --config … --skill-md ../injection-fidelity/SKILL.md --out runs/<run_id>/loss/<sample>.loss1.json`. Emit `rung_done`.

**Per topic (after its 6 rungs):** 10. `python scripts/run_codex_loss.py loss2 --triples <6 triples id0..id5> --intended-order id0,id1,id2,id3,id4,id5 --skill-md ../ladder-quality-order/SKILL.md --out runs/<run_id>/loss/<topic>.loss2.json --seed <fixed>`. 11. `python ../../scripts/gate_eval.py topic --fidelity-rate <topic fidelity_rate> --mono <loss2.monotonicity_pass> --endpoint <loss2.endpoint_separation_pass>`. Emit `topic_done`. 12. `python ../../scripts/write_dataset.py --run-dir … --sample … --topic … --rung … --out-root dataset --loss1 … --topic-pass …` ×6 (one per rung).

**Batch close:** 13. `python ../../scripts/gate_eval.py batch --flags <8 topic-pass bools>`. Emit `batch_done` (include `recent_ratios`). 14. `python ../../scripts/gate_eval.py converged --recent <last-3 batch ratios>`.

  • TRUE → freeze weights, emit `converged` + `run_end`. Done.
  • FALSE → go to §backprop, then a new batch.

Follow this section exactly; no improvisation in the control flow.

§gate

Delegate ALL gate arithmetic to `../../scripts/gate_eval.py` (pure, no CC/codex):

  • per-topic: 3-way AND (`fidelity_rate ≥ FIDELITY_MIN` ∧ `monotonicity_pass` ∧

`endpoint_separation_pass`).

  • batch: `pass_ratio ≥ BATCH_RATIO_MIN`, hard integer line ≥ 7/8 topics.
  • converged: the trace-tail `recent_ratios`, last 3 all ≥ `BATCH_RATIO_MIN`.

Thresholds are NOT restated here. `FIDELITY_MIN` and `BATCH_RATIO_MIN` are the module constants in `../../scripts/gate_eval.py` — the single source of truth. New numbers the judges use (τ line, 丙 line, K, endpoint allowance, drift ε) live in `references/gate-thresholds.md`, which also points back, never copies.

check-blind: you read only `fidelity_rate`, `tau`, `monotonicity_pass`, `endpoint_separation_pass`, and codex verdicts. You never see or reason about any quality-check list. `rigor_floor_flag` is an orthogonal alarm — it is NOT in the AND.

§backprop — attribute first, then act (the one judgment point)

One batch changes ONE weight. First attribute the failure, then act. Read the trace coarse→fine (`batch_done` → `topic_done` → `loss/*.json`) and stop when decided.

Decision table:

| Signal read | Target weight | Key | | --- | --- | --- | | loss-1 fidelity fails (an axis collapsed) | `axis_prose` | the collapsed `AXIS.LEVEL` cell | | loss-2 endpoints NOT separated, `rigor_floor_flag == true` | NONE | alarm only — do NOT train ② (coords are frozen_label-locked; training ② is a no-op). Record and move on. | | loss-2 endpoints NOT separated, `rigor_floor_flag == false` | `axis_prose` | the id0 or id5 endpoint cell | | loss-2 middle collision (τ < TAU_MIN but endpoints separated) | `interp_params` | one of `collision_offset_axis` (B1/expression only), `endpoint_spread`, `granularity_map` | | ≥ 4/8 topics double-collapse (both losses fail) | `assembler_params` | the structural knob implicated |

Priority: loss-1 > loss-2 middle-collision > whole-card. Pre-gate: if a topic's z⊥C confound check is NOT flat, that topic's loss-2 is void — do NOT change any weight on it this batch.

Execution: the attribution is YOUR decision (no script). Then EITHER `python ../../scripts/apply_weight_update.py --weights-dir runs/<run_id>/weights --batch-id <batch_id> --target <target> --key <key> --new <new-text> --reason <why>` (F2: writes `weights/<batch+1>.json` + appends `revision_log.jsonl`), OR the same with `--copy` (F1: byte-copy forward, no log — when you decide NOT to change a weight this batch).

Before committing new `axis_prose` text, run it through `generator/

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The complete research orchestration system for AI-native science. What It Does Design Philosophy Architecture (v3.2.2) Quick Start Configuration Roadmap License DARE is not a tool that helps you do research. It is the researcher.

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