/paper-writing

name: paper-writing
description: "Workflow 3: Full paper writing pipeline that goes from a narrative report to a polished, submission-ready PDF. Use when user says \"写论文全流程\", \"write paper pipeline\", \"从报告到PDF\", \"paper writing\", or wants the complete paper generation workflow."
argument-hint: "[narrative-report-path-or-topic] [— style-ref: <source>]"
allowed-tools: Bash(*), Read, Write, Edit, Grep, Glob, Skill, mcp__codex__codex, mcp__codex__codex-reply

Workflow 3: Paper Writing Pipeline

Orchestrate a complete paper writing workflow for: **$ARGUMENTS**

Overview

This skill chains five sub-skills into a single automated pipeline:

/paper-plan → /paper-figure → /paper-write → /paper-compile → /auto-paper-improvement-loop
  (outline)     (plots)        (LaTeX)        (build PDF)       (review & polish ×2)

Each phase builds on the previous one's output. The final deliverable is a polished, reviewed `paper/` directory with LaTeX source and compiled PDF.

In this hybrid pack, the pipeline itself is unchanged, but `paper-plan` and `paper-write` use Orchestra-adapted shared references for stronger story framing and prose guidance.

Constants

• **VENUE = `ICLR`** — Target venue. Options: `ICLR`, `NeurIPS`, `ICML`, `CVPR`, `ACL`, `AAAI`, `ACM`, `IEEE_JOURNAL` (IEEE Transactions / Letters), `IEEE_CONF` (IEEE conferences). Affects style file, page limit, citation format.
• **MAX_IMPROVEMENT_ROUNDS = 2** — Number of review→fix→recompile rounds in the improvement loop.
• **REVIEWER_MODEL = `gpt-5.6-sol`** — Model used via Codex MCP for plan review, figure review, writing review, and improvement loop.
• **AUTO_PROCEED = true** — Auto-continue between phases. Set `false` to pause and wait for user approval after each phase.
• **HUMAN_CHECKPOINT = false** — When `true`, the improvement loop (Phase 5) pauses after each round's review to let you see the score and provide custom modification instructions. When `false` (default), the loop runs fully autonomously. Passed through to `/auto-paper-improvement-loop`.
• **ILLUSTRATION = `figurespec`** — Architecture/illustration generator for Phase 2b: `figurespec` (default, deterministic JSON→SVG via `/figure-spec`, best for architecture/workflow/topology), `gemini` (AI-generated via `/paper-illustration`, best for qualitative method illustrations; needs `GEMINI_API_KEY`), `codex-image2` (AI-generated via `/paper-illustration-image2` through the local Codex native image bridge — no external API key, uses your ChatGPT Plus/Pro quota; experimental), `mermaid` (Mermaid syntax via `/mermaid-diagram`, free, best for flowcharts), or `false` (skip Phase 2b, manual only).

> Override inline: `/paper-writing "NARRATIVE_REPORT.md" — venue: NeurIPS, illustration: gemini, human checkpoint: true` > IEEE example: `/paper-writing "NARRATIVE_REPORT.md" — venue: IEEE_JOURNAL`

Inputs

This pipeline accepts one of:

1. **`NARRATIVE_REPORT.md`** (best) — structured research narrative with claims, experiments, results, figures 2. **Research direction + experiment results** — the skill will help draft the narrative first 3. **Existing `PAPER_PLAN.md`** — skip Phase 1, start from **Phase 1.5** (the contract negotiation still runs; only resuming a genuine pre-1.5 legacy run may skip it, and then Phase 6.0's row 0 records "no contract")

The more detailed the input (especially figure descriptions and quantitative results), the better the output.

Optional: Style reference (`— style-ref: <source>`, opt-in)

Lets the user steer **structural** style (section ordering, theorem density, sentence cadence, figure density, bibliography style) of the generated paper toward a reference paper they admire. **Default OFF — when the user does not pass `— style-ref`, do nothing differently from before.**

When `— style-ref: <source>` is in `$ARGUMENTS`, run the helper FIRST, before Phase 1 (paper-plan):

# Resolve $STYLE_HELPER via the canonical strict-safe chain (see
# shared-references/integration-contract.md §2). Policy A — gate:
# unresolved helper means --style-ref cannot be satisfied, so abort.
cd "$(git rev-parse --show-toplevel 2>/dev/null || pwd)" || exit 1
if [ -z "${ARIS_REPO:-}" ] && [ -f .aris/installed-skills.txt ]; then
    ARIS_REPO=$(awk -F'\t' '$1=="repo_root"{print $2; exit}' .aris/installed-skills.txt 2>/dev/null) || true
fi
if [ -z "${ARIS_REPO:-}" ] && [ -f "$HOME/.aris/repo" ]; then
    ARIS_REPO=$(cat "$HOME/.aris/repo" 2>/dev/null) || true
fi
STYLE_HELPER=".aris/tools/extract_paper_style.py"
[ -f "$STYLE_HELPER" ] || STYLE_HELPER="tools/extract_paper_style.py"
[ -f "$STYLE_HELPER" ] || { [ -n "${ARIS_REPO:-}" ] && STYLE_HELPER="$ARIS_REPO/tools/extract_paper_style.py"; }
[ -f "$STYLE_HELPER" ] || {
  echo "ERROR: extract_paper_style.py not resolved at .aris/tools/, tools/, \$ARIS_REPO/tools/, or via ~/.aris/repo." >&2
  echo "       Fix: rerun bash tools/install_aris.sh or smart_update.sh (refreshes ~/.aris/repo), export ARIS_REPO, or copy the helper to tools/." >&2
  echo "       --style-ref cannot be satisfied; aborting." >&2
  exit 1
}
STYLE_STATUS=0
CACHE=$(python3 "$STYLE_HELPER" --source "<source>") || STYLE_STATUS=$?
case "$STYLE_STATUS" in
  0) ;;                                       # share $CACHE/style_profile.md with downstream WRITER phases only
  2) echo "warning: style-ref skipped (missing optional dep)" >&2 ;;
  3) echo "error: --style-ref source failed; aborting pipeline" >&2 ; exit 1 ;;
  *) echo "error: helper failed unexpectedly; aborting pipeline" >&2 ; exit 1 ;;
esac

Then forward `— style-ref: <source>` only to the **writer-side** sub-skills:

• `/paper-plan` (Phase 1) — outline structure
• `/paper-write` (Phase 3) — section-by-section prose
• `/paper-illustration` (Phase 2b) — figure structural matching, optional

Sources accepted: local TeX dir / file, local PDF, arXiv id, http(s) URL. Overleaf URLs/IDs are rejected — clone via `/overleaf-sync setup <id>` first and pass the local clone path.

**Strict