adaptyv
How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. Use this skill whenever the user…
High-performance DataFrame library for Python ETL, analytics, and pandas migration. Use for expression-based data manipulation with lazy query optimization, parallel execution, streaming out-of-core processing, Arrow interoperability, and optional GPU execution.
$ npx -y skills add K-Dense-AI/scientific-agent-skills --skill polars --agent claude-codeHow it fires
How this skill gets triggered: by you, by Claude, or both.
/polarsContext preview
The summary Claude sees to decide when to auto-load this skill.
High-performance DataFrame library for Python ETL, analytics, and pandas migration. Use for expression-based data manipulation with lazy query optimization, parallel execution, streaming out-of-core processing, Arrow interoperability, and optional GPU execution.
name: polars description: High-performance DataFrame library for Python ETL, analytics, and pandas migration. Use for expression-based data manipulation with lazy query optimization, parallel execution, streaming out-of-core processing, Arrow interoperability, and optional GPU execution. license: https://github.com/pola-rs/polars/blob/main/LICENSE allowed-tools: Read compatibility: Requires Python 3.10+ for polars 1.41.x. Install with uv pip install; optional extras enable Excel, database, cloud, pandas/NumPy, and GPU integrations. metadata: version: "1.2" skill-author: K-Dense Inc.
Polars is a lightning-fast DataFrame library for Python and Rust built on Apache Arrow. Work with Polars' expression-based API, lazy evaluation framework, and high-performance data manipulation capabilities for efficient data processing, pandas migration, and data pipeline optimization.
Install the current stable Polars release verified during this refresh:
uv pip install "polars==1.41.2"
Install optional integrations only when needed:
uv pip install "polars[excel,database,fsspec,pandas,numpy]==1.41.2"
Basic DataFrame creation and operations:
import polars as pl
# Create DataFrame
df = pl.DataFrame({
"name": ["Alice", "Bob", "Charlie"],
"age": [25, 30, 35],
"city": ["NY", "LA", "SF"]
})
# Select columns
df.select("name", "age")
# Filter rows
df.filter(pl.col("age") > 25)
# Add computed columns
df.with_columns(
age_plus_10=pl.col("age") + 10
)Expressions are the fundamental building blocks of Polars operations. They describe transformations on data and can be composed, reused, and optimized.
**Key principles:**
**Example:**
# Expression-based computation
df.select(
pl.col("name"),
(pl.col("age") * 12).alias("age_in_months")
)**Eager (DataFrame):** Operations execute immediately
df = pl.read_csv("file.csv") # Reads immediately
result = df.filter(pl.col("age") > 25) # Executes immediately**Lazy (LazyFrame):** Operations build a query plan, optimized before execution
lf = pl.scan_csv("file.csv") # Doesn't read yet
result = lf.filter(pl.col("age") > 25).select("name", "age")
df = result.collect() # Now executes optimized query**When to use lazy:**
**Benefits of lazy evaluation:**
For detailed concepts, load `references/core_concepts.md`.
Select and manipulate columns:
# Select specific columns
df.select("name", "age")
# Select with expressions
df.select(
pl.col("name"),
(pl.col("age") * 2).alias("double_age")
)
# Select all columns matching a pattern
df.select(pl.col("^.*_id$"))Filter rows by conditions:
# Single condition
df.filter(pl.col("age") > 25)
# Multiple conditions (cleaner than using &)
df.filter(
pl.col("age") > 25,
pl.col("city") == "NY"
)
# Complex conditions
df.filter(
(pl.col("age") > 25) | (pl.col("city") == "LA")
)Add or modify columns while preserving existing ones:
# Add new columns
df.with_columns(
age_plus_10=pl.col("age") + 10,
name_upper=pl.col("name").str.to_uppercase()
)
# Parallel computation (all columns computed in parallel)
df.with_columns(
pl.col("value") * 10,
pl.col("value") * 100,
)Group data and compute aggregations:
# Basic grouping
df.group_by("city").agg(
pl.col("age").mean().alias("avg_age"),
pl.len().alias("count")
)
# Multiple group keys
df.group_by("city", "department").agg(
pl.col("salary").sum()
)
# Conditional aggregations
df.group_by("city").agg(
(pl.col("age") > 30).sum().alias("over_30")
)For detailed operation patterns, load `references/operations.md`.
Common aggregations within `group_by` context:
Apply aggregations while preserving row count:
# Add group statistics to each row
df.with_columns(
avg_age_by_city=pl.col("age").mean().over("city"),
rank_in_city=pl.col("salary").rank().over("city")
)
# Multiple grouping columns
df.with_columns(
group_avg=pl.col("value").mean().over("category", "region")
)**Mapping strategies:**
Polars supports reading and writing:
**CSV:**
# Eager
df = pl.read_csv("file.csv")
df.write_csv("output.csv")
# Lazy (preferred for large files)
lf = pl.scan_csv("file.csv")
result = lf.filter(...).select(...).collect()**Parquet (recommended for performance):**
df = pl.read_parquet("file.parquet")
df.write_parquet("output.parquet")**JSON:**
df = pl.read_json("file.json")
df.write_json("output.json")For comprehensive I/O documentation, load `references/io_guide.md`.
Combine DataFrames:
# Inner join df1.join(df2, on="id"
🔔 Claude Scientific Skills is now Scientific Agent Skills. Same skills, broader compatibility — now works with any AI agent that supports the open Agent Skills standard, not just Claude.
How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. Use this skill whenever the user…
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection,…
Plan, execute, and document validation, verification, and transfer of analytical procedures under the governing framework - ICH Q2(R2) and Q14, USP…
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data…
Autonomously improve a real artifact (code, training recipe, agent harness, data pipeline, prompt) against an objective and an evaluator, using Hypothesis Tree…
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk…