13c-metabolic-flux
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps,β¦
Formats and structurally validates local treatment-plan documentation after clinical decisions have already been supplied and verified by authorized licensed professionals. Use for source traceability, clinician-authored intervention records, goals and checkpoints,
Claude Code
$ npx -y skills add K-Dense-AI/scientific-agent-skills --skill treatment-plans --agent claude-code
Codex
$ npx skills add K-Dense-AI/scientific-agent-skills --skill treatment-plans -a codex -y
Cursor
$ npx skills add K-Dense-AI/scientific-agent-skills --skill treatment-plans -a cursor -y
Gemini CLI
$ npx skills add K-Dense-AI/scientific-agent-skills --skill treatment-plans -a gemini-cli -y
GitHub Copilot
$ npx skills add K-Dense-AI/scientific-agent-skills --skill treatment-plans -a github-copilot -y
OpenCode
$ npx skills add K-Dense-AI/scientific-agent-skills --skill treatment-plans -a opencode -y
Windsurf
$ npx skills add K-Dense-AI/scientific-agent-skills --skill treatment-plans -a windsurf -y
name: treatment-plans description: Formats and structurally validates local treatment-plan documentation after clinical decisions have already been supplied and verified by authorized licensed professionals. Use for source traceability, clinician-authored intervention records, goals and checkpoints, shared-decision records, reconciliation handoffs, and release gatesβnot for clinical decision-making. license: MIT compatibility: Python 3.11+ standard library; local JSON files only. Bundled CLIs require no network, external services, models, images, credentials, environment variables, or third-party packages. metadata: version: "2.4" last-reviewed: "2026-10-01" skill-author: K-Dense Inc.
This skill only **formats and validates documentation of decisions already made, supplied, and verified by authorized licensed professionals**.
Never use it to:
If a request crosses a boundary, stop. Ask for a locally verified clinician-authored record or route the matter to the responsible licensed professional. Do not redirect to another skill to obtain a patient-specific recommendation.
If a concern may be urgent or emergent, stop this workflow and route it through the institution's current clinical escalation or emergency process. This skill does not decide urgency and does not provide emergency instructions.
Every component and derived schedule must display:
> **DRAFT β NOT MEDICAL ADVICE β DOCUMENTATION-ONLY β AUTHORIZED CLINICIAN SIGN-OFF REQUIRED**
Structural success never removes this notice. Only the authorized local workflow may set the release gate.
Prefer synthetic or qualified de-identified structured manifests. Do not place patient names, medical-record numbers, contact details, dates of birth, addresses, free-text notes, images, or other direct identifiers in examples.
For any real-patient or patient-derived data:
1. Work only in a locally authorized environment under the institution's current privacy, security, retention, and access policies. 2. Use the minimum information necessary for the documented purpose, even when a legal exception may apply. 3. Do not send content to a model, search engine, API, image service, telemetry service, or any other external tool. 4. Do not copy content into chat prompts, command history, logs, test fixtures, examples, screenshots, or reports. 5. Run bundled scripts only against local paths. Their reports identify rule codes and field paths, not clinical values. 6. Require qualified privacy review before treating patient-derived material as de-identified or releasing it.
If these conditions are not documented, do not read or process the content. Use synthetic templates only.
Accept only bounded UTF-8 JSON objects built from these generic templates:
The templates contain no disease-specific recommendations, example patients, clinical intervals, doses, targets, thresholds, or inferred care pathways. Empty template arrays and pending attestations are intentional release blockers.
Read `references/safety_scope.md` and `references/privacy_governance.md` before processing patient-derived material.
Run the following commands from the skill directory (`skills/treatment-plans` in this repository). The generated files are JSON, with no PDF, LaTeX, or rendered clinical plan.
python3 scripts/generate_template.py \ --output-dir ./local-plan-package \ --subject-ref SYNTHETIC-CASE-001 \ --classification synthetic
The generator copies all six templates. It does not create clinical content and does not overwrite existing files.
π Claude Scientific Skills is now Scientific Agent Skills. Same skills, broader compatibility β now works with any AI agent that supports the open Agent Skills standard, not just Claude.
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps,β¦
Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit sequences,β¦
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting,β¦
AlphaGenome API key, free for non-commercial use from deepmind.google.com/science/alphagenome. ALPHA_GENOME_API_KEY is acceptedβ¦
Plans, executes, and documents validation, verification, and transfer of analytical procedures under the governing framework -β¦
Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is theβ¦
Use this skill to extract structured Markdown/JSON from PDFs and document imagesβtables with cell-level precision, formulas asβ¦