13c-metabolic-flux
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps,โฆ
Zotero library type: ''user'' or ''group'' (default ''user'').
Claude Code
$ npx -y skills add K-Dense-AI/scientific-agent-skills --skill pyzotero --agent claude-code
Codex
$ npx skills add K-Dense-AI/scientific-agent-skills --skill pyzotero -a codex -y
Cursor
$ npx skills add K-Dense-AI/scientific-agent-skills --skill pyzotero -a cursor -y
Gemini CLI
$ npx skills add K-Dense-AI/scientific-agent-skills --skill pyzotero -a gemini-cli -y
GitHub Copilot
$ npx skills add K-Dense-AI/scientific-agent-skills --skill pyzotero -a github-copilot -y
OpenCode
$ npx skills add K-Dense-AI/scientific-agent-skills --skill pyzotero -a opencode -y
Windsurf
$ npx skills add K-Dense-AI/scientific-agent-skills --skill pyzotero -a windsurf -y
name: pyzotero
description: >-
Manages Zotero reference libraries using the pyzotero Python client: retrieves, creates, updates, and deletes items, collections, tags, and attachments via the Zotero Web API v3 or local API. Applies when working with Zotero libraries programmatically, managing bibliographic references, exporting citations, searching library contents, uploading PDF attachments, or building research automation workflows that integrate with Zotero.
allowed-tools: Read Write Edit Bash
license: MIT License
compatibility: Requires Python 3.10+ and pyzotero 1.15.2. Remote access needs network access; private reads and writes need a Zotero API key. Local reads require Zotero 7+ with local API enabled; local writes require Zotero 10+ and separate local authorization.
metadata:
version: "1.4"
last-reviewed: "2026-09-30"
upstream-version: "1.15.2"
skill-author: K-Dense Inc.
openclaw:
primaryEnv: ZOTERO_API_KEY
envVars:
- name: ZOTERO_API_KEY
required: false
description: Zotero Web API key for private reads and remote writes; not needed for public or local reads.
- name: ZOTERO_LIBRARY_ID
required: false
description: Remote Zotero user or group ID; local personal-library reads can use user ID 0.
- name: ZOTERO_LIBRARY_TYPE
required: false
description: 'Zotero library type: ''user'' or ''group'' (default ''user'').'Pyzotero is a Python wrapper for the [Zotero API v3](https://www.zotero.org/support/dev/web_api/v3/start). Use it to programmatically manage Zotero libraries: read items and collections, create and update references, upload attachments, manage tags, and export citations.
**Reviewed target:** [pyzotero 1.15.2](https://pypi.org/project/pyzotero/1.15.2/) on 2026-09-30. Checked official [SDK documentation](https://pyzotero.readthedocs.io/en/latest/), release source, and [Web API contracts](https://www.zotero.org/support/dev/web_api/v3/basics). Examples requiring a private library or running Zotero are illustrative; read-only public probes and isolated SDK contract checks do not establish authenticated write success.
**For remote private reads and writes**, get credentials from https://www.zotero.org/settings/keys:
Store credentials in environment variables or a `.env` file:
ZOTERO_LIBRARY_ID=your_user_id ZOTERO_API_KEY=your_api_key ZOTERO_LIBRARY_TYPE=user # or "group"
See [references/authentication.md](references/authentication.md) for full setup details.
uv add "pyzotero==1.15.2" # Reviewed Web API client uv add "pyzotero[cli]==1.15.2" # + local CLI uv add "pyzotero[mcp]==1.15.2" # + MCP server
import os
from pyzotero import Zotero
zot = Zotero(
library_id=os.environ['ZOTERO_LIBRARY_ID'],
library_type=os.environ.get('ZOTERO_LIBRARY_TYPE', 'user'),
api_key=os.environ['ZOTERO_API_KEY'],
)
# Retrieve top-level items (returns 100 by default)
items = zot.top(limit=10)
for item in items:
print(item['data'].get('title', ''), item['data']['itemType'])
# Search by keyword
results = zot.items(q='machine learning', limit=20)
# Retrieve all items (use everything() for complete results)
all_items = zot.everything(zot.items())| File | Contents | |------|----------| | [references/authentication.md](references/authentication.md) | Credentials, library types, local mode | | [references/read-api.md](references/read-api.md) | Retrieving items, collections, tags, groups | | [references/search-params.md](references/search-params.md) | Filtering, sorting, search parameters | | [references/write-api.md](references/write-api.md) | Creating, updating, deleting items | | [references/collections.md](references/collections.md) | Collection CRUD operations | | [references/tags.md](references/tags.md) | Tag access and management | | [references/files-attachments.md](references/files-attachments.md) | File download and attachment uploads | | [references/exports.md](references/exports.md) | BibTeX, CSL-JSON, bibliography export | | [references/pagination.md](references/pagination.md) | follow(), everything(), generators | | [references/full-text.md](references/full-text.md) | Full-text content indexing and access | | [references/saved-searches.md](references/saved-searches.md) | Saved search management | | [references/cli.md](references/cli.md) | Command-line interface (local Zotero) | | [references/mcp.md](references/mcp.md) | MCP server for LLM clients (local Zotero) | | [references/error-handling.md](references/error-handling.md) | Errors and exception handling |
item = zot.item('ITEMKEY')
item['data']['title'] = 'New Title'
zot.update_item(item)template = zot.item_template('journalAr๐ Claude Scientific Skills is now Scientific Agent Skills. Same skills, broader compatibility โ now works with any AI agent that supports the open Agent Skills standard, not just Claude.
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps,โฆ
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