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/pytorch-lightning

Deep learning framework (PyTorch Lightning / lightning package). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard, MLflow), distributed training (DDP, FSDP, DeepSpeed), for scalable

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k-dense-ai-scientific-agent-skills
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$ npx -y skills add k-dense-ai/claude-scientific-skills --skill pytorch-lightning --agent claude-code

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  • Fires itselfAuto-invocation. Claude auto-loads it when your prompt matches the work.Auto-invocation is when the right skill fires by itself at the right moment, driven by a FLOW.md router and a hook, instead of you invoking it by name. It is the difference between a skill being installed and a skill actually getting used.Read the full definition →
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Deep learning framework (PyTorch Lightning / lightning package). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard, MLflow), distributed training (DDP, FSDP, DeepSpeed), for scalable

SKILL.md

pytorch-lightning.SKILL.md
name: pytorch-lightning
description: Deep learning framework (PyTorch Lightning / lightning package). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard, MLflow), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.
allowed-tools: Read Write Edit Bash
license: Apache-2.0 license
compatibility: Requires Python 3.10+ and lightning 2.6+ (or pytorch-lightning 2.6+). GPU training needs CUDA-capable PyTorch. Optional loggers (wandb, mlflow, comet-ml) and DeepSpeed require separate installs.
metadata:
  version: "1.2"
  skill-author: K-Dense Inc.

PyTorch Lightning

Overview

PyTorch Lightning is a deep learning framework that organizes PyTorch code to eliminate boilerplate while maintaining full flexibility. Automate training workflows, multi-device orchestration, and implement best practices for neural network training and scaling across multiple GPUs/TPUs.

**Current upstream:** lightning 2.6.4 (PyPI, May 2026). Docs: [lightning.ai/docs/pytorch/stable](https://lightning.ai/docs/pytorch/stable/). Use `import lightning as L` (the `pytorch-lightning` package name still installs the same library).

Installation

uv pip install lightning

Optional extras:

uv pip install lightning[extra]    # loggers, strategies, etc.
uv pip install wandb mlflow        # specific loggers as needed

When to Use This Skill

This skill should be used when:

  • Building, training, or deploying neural networks using PyTorch Lightning
  • Organizing PyTorch code into LightningModules
  • Configuring Trainers for multi-GPU/TPU training
  • Implementing data pipelines with LightningDataModules
  • Working with callbacks, logging, and distributed training strategies (DDP, FSDP, DeepSpeed)
  • Structuring deep learning projects professionally

Core Capabilities

1. LightningModule - Model Definition

Organize PyTorch models into six logical sections:

1. **Initialization** - `__init__()` and `setup()` 2. **Training Loop** - `training_step(batch, batch_idx)` 3. **Validation Loop** - `validation_step(batch, batch_idx)` 4. **Test Loop** - `test_step(batch, batch_idx)` 5. **Prediction** - `predict_step(batch, batch_idx)` 6. **Optimizer Configuration** - `configure_optimizers()`

**Quick template reference:** See `scripts/template_lightning_module.py` for a complete boilerplate.

**Detailed documentation:** Read `references/lightning_module.md` for comprehensive method documentation, hooks, properties, and best practices.

2. Trainer - Training Automation

The Trainer automates the training loop, device management, gradient operations, and callbacks. Key features:

  • Multi-GPU/TPU support with strategy selection (DDP, FSDP, DeepSpeed)
  • Automatic mixed precision training
  • Gradient accumulation and clipping
  • Checkpointing and early stopping
  • Progress bars and logging

**Quick setup reference:** See `scripts/quick_trainer_setup.py` for common Trainer configurations.

**Detailed documentation:** Read `references/trainer.md` for all parameters, methods, and configuration options.

3. LightningDataModule - Data Pipeline Organization

Encapsulate all data processing steps in a reusable class:

1. `prepare_data()` - Download and process data (single-process) 2. `setup()` - Create datasets and apply transforms (per-GPU) 3. `train_dataloader()` - Return training DataLoader 4. `val_dataloader()` - Return validation DataLoader 5. `test_dataloader()` - Return test DataLoader

**Quick template reference:** See `scripts/template_datamodule.py` for a complete boilerplate.

**Detailed documentation:** Read `references/data_module.md` for method details and usage patterns.

4. Callbacks - Extensible Training Logic

Add custom functionality at specific training hooks without modifying your LightningModule. Built-in callbacks include:

  • **ModelCheckpoint** - Save best/latest models
  • **EarlyStopping** - Stop when metrics plateau
  • **LearningRateMonitor** - Track LR scheduler changes
  • **BatchSizeFinder** - Auto-determine optimal batch size

**Detailed documentation:** Read `references/callbacks.md` for built-in callbacks and custom callback creation.

5. Logging - Experiment Tracking

Integrate with multiple logging platforms:

  • TensorBoard (default)
  • Weights & Biases (WandbLogger)
  • MLflow (MLFlowLogger)
  • Comet (CometLogger)
  • CSV (CSVLogger)

Note: `NeptuneLogger` was removed in lightning 2.6.4. Use W&B, MLflow, or TensorBoard instead.

Log metrics using `self.log("metric_name", value)` in any LightningModule method.

**Detailed documentation:** Read `references/logging.md` for logger setup and configuration.

6. Distributed Training - Scale to Multiple Devices

Choose the right strategy based on model size:

  • **DDP** - For models <500M parameters (ResNet, smaller transformers)
  • **FSDP** - For models 500M+ parameters (large transformers, recommended for Lightning users)
  • **DeepSpeed** - For cutting-edge features and fine-grained control

Configure with: `Trainer(strategy="ddp", accelerator="gpu", devices=4)`

**Detailed documentation:** Read `references/distributed_training.md` for strategy comparison and configuration.

7. Best Practices

  • Device agnostic code - Use `self.device` instead of `.cuda()`
  • Hyperparameter saving - Use `self.save_hyperparameters()` in `__init__()`
  • Metric logging - Use `self.log()` for automatic aggregation across devices
  • Reproducibility - Use `seed_everything()` and `Trainer(deterministic=True)`
  • Debugging - Use `Trainer(fast_dev_run=True)` to test with 1 batch

**Detailed documentation:** Read `references/best_practices.md` for common patterns and pitfalls.

Quick Workflow

1. **Define model:**

   class MyModel(L.LightningModule):
       def __init__(self):
           super().__init__()
           self.save_hyperparameters()
           self.model = YourNetwork()

       def training_step(self, batch,
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