13c-metabolic-flux
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps,โฆ
Builds, reviews, migrates, and plans MATLAB or GNU Octave numerical workflows. Use for arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability.
Claude Code
$ npx -y skills add K-Dense-AI/scientific-agent-skills --skill matlab --agent claude-code
Codex
$ npx skills add K-Dense-AI/scientific-agent-skills --skill matlab -a codex -y
Cursor
$ npx skills add K-Dense-AI/scientific-agent-skills --skill matlab -a cursor -y
Gemini CLI
$ npx skills add K-Dense-AI/scientific-agent-skills --skill matlab -a gemini-cli -y
GitHub Copilot
$ npx skills add K-Dense-AI/scientific-agent-skills --skill matlab -a github-copilot -y
OpenCode
$ npx skills add K-Dense-AI/scientific-agent-skills --skill matlab -a opencode -y
Windsurf
$ npx skills add K-Dense-AI/scientific-agent-skills --skill matlab -a windsurf -y
name: matlab description: Builds, reviews, migrates, and plans MATLAB or GNU Octave numerical workflows. Use for arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability. license: MIT compatibility: >- Documentation is pinned where noted to proprietary MATLAB R2026a and free GNU Octave 11.3.0. Bundled Python CLIs require Python 3.11+ and run locally without MATLAB or Octave; optional MAT inventory uses scipy and/or h5py. allowed-tools: Read Write Bash Glob Python metadata: version: "1.4" skill-author: "K-Dense Inc." last-reviewed: "2026-10-01"
Use this skill to design or review numerical code, migrate MATLAB releases, prepare reproducible projects, and plan trusted execution. MATLAB and GNU Octave are distinct products: compatibility is partial, not a license or behavior guarantee.
Reviewed against current MathWorks R2026b documentation and GNU Octave 11.3.0 sources on 2026-10-01. The bundled Engine planner and MATLAB examples retain an explicit R2026a baseline. R2026b supports CPython 3.10-3.14; do not reuse the R2026a Engine package for it. MATLAB/Octave examples are illustrative and were not executed in this review; the Python helpers have local synthetic tests. This skill uses local runtime APIs, with no remote service endpoint or API key.
named toolbox, MATLAB Test, MATLAB Compiler, MATLAB Coder, Parallel Computing Toolbox, or an add-on is installed, licensed, or available to the user.
with MATLAB Compiler; it cannot run arbitrary source or host MATLAB Engine for Python. Building artifacts needs the applicable licensed compiler and every product used by the source.
MATLAB toolboxes. Similar names do not imply API, numerical, graphics, or licensing equivalence.
the user actually has. Treat availability as `unknown` until confirmed.
See [Octave compatibility](references/octave-compatibility.md) and [execution/product boundaries](references/executing-scripts.md).
Never run an untrusted `.m`, `.mlx`, MEX binary, MAT file, project startup or shutdown action, package installer, or generated artifact. Static review does not prove safety.
Treat these as execution or code-loading surfaces:
timers, app callbacks, and dynamically modified paths;
`pyrun`, `pyrunfile`), MEX, and native libraries;
generated code;
handles, Java/System objects, and class code reachable from MAT files.
`.mlx` is an opaque archive for this toolkit and MEX is native executable code. Do not use Python pickle for exchange. Inspect first, isolate when appropriate, obtain explicit approval, then invoke a user-confirmed executable and license. Bundled scripts are static or dry-run tools: none launches MATLAB, Octave, Python Engine, a compiler, or a subprocess.
1. **Clarify target.** Record MATLAB release or Octave version, OS/architecture, base product versus required toolboxes/packages, expected inputs/outputs, numerical tolerances, and whether execution is authorized. 2. **Inventory statically.** Scan `.m` files, opaque artifacts, project paths, required products, and MAT headers before any runtime loads them. 3. **Choose code form.** Prefer functions with an `arguments` block for automation. Use scripts only for controlled orchestration and live scripts for reviewed interactive narratives. 4. **Make semantics explicit.** Record shapes, classes, units, missing-value rules, indexing, implicit expansion, RNG algorithm/seed, tolerances, and output formats. 5. **Test without hidden state.** Keep fixtures synthetic, paths project-local, graphics deterministic, and tests independent of base-workspace residue. 6. **Plan execution.** Generate an argv plan, review startup/path effects and licenses, and launch only after explicit approval outside these helpers. 7. **Capture provenance.** Hash named inputs/code and record release, products, RNG policy, tolerances, and command plan without dumping the environment.
Functions have local workspaces and explicit inputs/outputs.
review artifacts. Export reviewed code to `.m` for static inspection.
variables, and silent name shadowing. Use project roots and `fullfile`.
type declarations can convert inputs and size declarations can reshape or expand compatible inputs; validators check without converting.
are private to the file; since R2024a they can appear anywhere in a script outside conditional contexts.
function y = scaleSignal(x, options)
arguments
x (:,1) double {mustBeFinite}
options.Scale (1,1) double {mustBeFinite, mustBeNonzero} = 1
end
y = x .* options.Scale;
endRead [programming](references/programming.md).
`A{...}`, and `A.(name)` hav
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