13c-metabolic-flux
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps,โฆ
Scales pandas, NumPy, and custom Python research workflows beyond memory or across clusters with Dask. Covers DataFrames, Arrays, Bags, Futures, chunking, schedulers, and distributed diagnostics. Use for partitioned file processing, scientific array computation, or parallel
Claude Code
$ npx -y skills add K-Dense-AI/scientific-agent-skills --skill dask --agent claude-code
Codex
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dask -a codex -y
Cursor
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dask -a cursor -y
Gemini CLI
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dask -a gemini-cli -y
GitHub Copilot
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dask -a github-copilot -y
OpenCode
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dask -a opencode -y
Windsurf
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dask -a windsurf -y
name: dask description: Scales pandas, NumPy, and custom Python research workflows beyond memory or across clusters with Dask. Covers DataFrames, Arrays, Bags, Futures, chunking, schedulers, and distributed diagnostics. Use for partitioned file processing, scientific array computation, or parallel tasks whose memory and dependency structure require Dask. allowed-tools: Read Write Edit Bash license: BSD-3-Clause license compatibility: Requires Python 3.10+ and dask 2026.8.0; current Zarr 3.4 needs Python 3.12+. DataFrame workflows need pandas 2+ and PyArrow 16+. Cloud paths (s3://, gcs://) need s3fs or gcsfs. Cluster deployment uses dask.distributed (included with dask[complete]). metadata: version: "1.4" last-reviewed: "2026-09-30" skill-author: K-Dense Inc.
Dask is a Python library for parallel and distributed computing that enables three critical capabilities:
Capacity depends on partition sizes, intermediate data, concurrency, storage, and available memory.
**Reviewed release:** dask/distributed **2026.8.0** (September 30, 2026 review). Docs: [docs.dask.org](https://docs.dask.org/en/stable/). Since **2025.1.0**, the expression-based DataFrame API with query planning is the only implementation โ do not install `dask-expr` separately or set `dataframe.query-planning: False`.
uv pip install "dask[array,dataframe]==2026.8.0"
For a typical pandas/NumPy workflow with the distributed scheduler and dashboard:
uv pip install "dask[complete]==2026.8.0"
Remote object storage (requires provider credentials for private data):
uv pip install s3fs # s3:// paths uv pip install gcsfs # gs:// paths
Requires **Python 3.10+**, pandas 2+, PyArrow 16+. Zarr, HDF5, SciPy, Xarray, Dask-ML, and cluster deployment packages are separate optional dependencies. See [review and validation](references/review.md) for tested versions, source links, and limits. File paths and undefined application functions below are illustrative. Put process scheduler/`Client()` execution in a `main()` guarded by `if __name__ == "__main__":` in scripts; close clients and clusters afterward.
This skill should be used when:
Dask provides five main components, each suited to different use cases:
**Purpose**: Scale pandas operations to larger datasets through parallel processing.
**When to Use**:
**Reference Documentation**: For comprehensive guidance on Dask DataFrames, refer to `references/dataframes.md` which includes:
**Quick Example**:
import dask.dataframe as dd
# Read multiple files as single DataFrame
ddf = dd.read_csv('data/2024-*.csv')
# Operations are lazy until compute()
filtered = ddf[ddf['value'] > 100]
result = filtered.groupby('category')['value'].mean().compute()**Key Points**:
**Purpose**: Extend NumPy capabilities to datasets larger than memory using blocked algorithms.
**When to Use**:
**Reference Documentation**: For comprehensive guidance on Dask Arrays, refer to `references/arrays.md` which includes:
**Quick Example**:
import dask.array as da # Small executable example; size chunks from uncompressed memory before scaling x = da.random.default_rng(42).random((1000, 1000), chunks=(250, 250)) # Operations are lazy y = x + 100 z = y.mean(axis=0) # Compute result result = z.compute()
**Key Points**:
**Purpose**: Process unstructured or semi-structured data (text, JSON, logs) with functional operations.
**When to Use**:
**Reference Documentation**: For comprehensive guidance on Dask Bags, refer to `references/bags.md` which includes:
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