13c-metabolic-flux
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps,โฆ
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations
Claude Code
$ npx -y skills add K-Dense-AI/scientific-agent-skills --skill aeon --agent claude-code
Codex
$ npx skills add K-Dense-AI/scientific-agent-skills --skill aeon -a codex -y
Cursor
$ npx skills add K-Dense-AI/scientific-agent-skills --skill aeon -a cursor -y
Gemini CLI
$ npx skills add K-Dense-AI/scientific-agent-skills --skill aeon -a gemini-cli -y
GitHub Copilot
$ npx skills add K-Dense-AI/scientific-agent-skills --skill aeon -a github-copilot -y
OpenCode
$ npx skills add K-Dense-AI/scientific-agent-skills --skill aeon -a opencode -y
Windsurf
$ npx skills add K-Dense-AI/scientific-agent-skills --skill aeon -a windsurf -y
name: aeon description: This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs. license: BSD-3-Clause license allowed-tools: Read Write Edit Bash compatibility: Requires Python 3.11-3.14 and aeon 1.6.0. Optional stumpy for matrix profiles, TensorFlow for deep learning. Network needed only for installation and remote datasets/results. metadata: version: "1.3" last-reviewed: "2026-09-30" skill-author: K-Dense Inc.
Aeon is a scikit-learn compatible Python toolkit for time series machine learning ([aeon-toolkit.org](https://www.aeon-toolkit.org/)). It provides algorithms across classification, regression, clustering, forecasting, anomaly detection, segmentation, similarity search, distances, transformations, benchmarking, and visualization โ with a consistent estimator API.
**Version note:** Reviewed against **aeon 1.6.0** (Python 3.13). Small synthetic checks cover classification, regression, clustering, forecasts, preprocessing, distances, search, segmentation, matrix profiles, metrics, and local dataset I/O. Remote archive and TensorFlow training snippets are illustrative; they were not executed during this review. Reference catalogs are selected methods, not exhaustive lists. See the [1.6 release notes](https://www.aeon-toolkit.org/en/stable/changelogs/v1.6.html).
Apply this skill when:
Requires **Python 3.11-3.14**. Pin the reviewed release for reproducibility:
uv pip install "aeon==1.6.0"
Install only the extras required by the chosen estimator. The broad optional set is available as:
uv pip install "aeon[all_extras]==1.6.0"
On zsh, quote the extras: `uv pip install "aeon[all_extras]==1.6.0"`.
For the matrix-profile examples: `uv pip install "aeon==1.6.0" stumpy`. Range precision/recall/F-score depend on `prts`, whose current NumPy<2 requirement conflicts with aeon 1.6; use the runnable AUC metrics or a separately validated environment. Deep learning estimators use TensorFlow. Inspect an estimator's `python_dependencies` tag before installing optional packages.
Upstream treats **forecasting**, **anomaly_detection**, **segmentation**, **similarity_search**, and **visualisation** as experimental โ interfaces may change between minor releases. Prefer stable modules (classification, regression, clustering, distances, transformations) for production pipelines unless you need these tasks.
Categorize time series into predefined classes. See `references/classification.md` for selected methods.
**Quick Start:**
from aeon.classification.convolution_based import RocketClassifier
from aeon.datasets import load_classification
# Load data
X_train, y_train = load_classification("GunPoint", split="train")
X_test, y_test = load_classification("GunPoint", split="test")
# Train classifier
clf = RocketClassifier(n_kernels=10000)
clf.fit(X_train, y_train)
accuracy = clf.score(X_test, y_test)**Algorithm Selection:**
Predict continuous values from time series. See `references/regression.md` for algorithms.
**Quick Start:**
from aeon.regression.convolution_based import RocketRegressor
from aeon.datasets import load_regression
X_train, y_train = load_regression("Covid3Month", split="train")
X_test, y_test = load_regression("Covid3Month", split="test")
reg = RocketRegressor()
reg.fit(X_train, y_train)
predictions = reg.predict(X_test)Group similar time series without labels. See `references/clustering.md` for methods.
**Quick Start:**
from aeon.clustering import TimeSeriesKMeans
clusterer = TimeSeriesKMeans(
n_clusters=3,
distance="dtw",
averaging_method="ba"
)
labels = clusterer.fit_predict(X_train)
centers = clusterer.cluster_centers_Predict future time series values (experimental module in aeon 1.x). See `references/forecasting.md` for forecasters.
**Quick Start:**
import numpy as np from aeon.forecasting import NaiveForecaster from aeon.forecasting.stats import ARIMA y_train = np.array([1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0]) # predict returns one value at the configured horizon, not a 5-value vector naive = NaiveForecaster(strategy="drift", horizon=5) naive.fit(y_train) y_at_5 = naive.predict(y_train) # 15.0 # ARIMA uses p/d/q (not order=); multi-step via iterative_forecast arima = ARIMA(p=1, d=1, q=1) y_pred = arima.iterative_forecast(y_train, prediction_horizon=5) # fits once
Identify unusual patterns or outliers. See `references/anomaly_detection.md` for detectors.
**Quick Start:**
from aeon.anomaly_detection.series.distance_based import STOMP detector = STOMP(window_size=50) anomaly_scores = detector.fit_predict(y) # Higher scores indicate anomalies thres
๐ Claude Scientific Skills is now Scientific Agent Skills. Same skills, broader compatibility โ now works with any AI agent that supports the open Agent Skills standard, not just Claude.
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