/security-scan
Scan your Claude Code configuration (.claude/ directory) for security vulnerabilities, misconfigurations, and injection risks using AgentShield. Checks CLAUDE.md, settings.json, MCP servers, hooks, and agent definitions.
Claude Code
$ npx -y skills add jdanigo/hydraia --skill security-scan --agent claude-code
Codex
$ npx skills add jdanigo/hydraia --skill security-scan -a codex -y
Cursor
$ npx skills add jdanigo/hydraia --skill security-scan -a cursor -y
Gemini CLI
$ npx skills add jdanigo/hydraia --skill security-scan -a gemini-cli -y
GitHub Copilot
$ npx skills add jdanigo/hydraia --skill security-scan -a github-copilot -y
OpenCode
$ npx skills add jdanigo/hydraia --skill security-scan -a opencode -y
Windsurf
$ npx skills add jdanigo/hydraia --skill security-scan -a windsurf -y
SKILL.md
security-scan.SKILL.mdname: security-scan
description: Scan your Claude Code configuration (.claude/ directory) for security vulnerabilities, misconfigurations, and injection risks using AgentShield. Checks CLAUDE.md, settings.json, MCP servers, hooks, and agent definitions.
metadata:
origin: ECC
Security Scan Skill
Audit your Claude Code configuration for security issues using [AgentShield](https://github.com/affaan-m/agentshield).
When to Activate
- Setting up a new Claude Code project
- After modifying `.claude/settings.json`, `CLAUDE.md`, or MCP configs
- Before committing configuration changes
- When onboarding to a new repository with existing Claude Code configs
- Periodic security hygiene checks
What It Scans
| File | Checks | |------|--------| | `CLAUDE.md` | Hardcoded secrets, auto-run instructions, prompt injection patterns | | `settings.json` | Overly permissive allow lists, missing deny lists, dangerous bypass flags | | `mcp.json` | Risky MCP servers, hardcoded env secrets, npx supply chain risks | | `hooks/` | Command injection via interpolation, data exfiltration, silent error suppression | | `agents/*.md` | Unrestricted tool access, prompt injection surface, missing model specs |
Prerequisites
AgentShield must be installed. Check and install if needed:
# Check if installed
npx ecc-agentshield --version
# Install globally (recommended)
npm install -g ecc-agentshield
# Or run directly via npx (no install needed)
npx ecc-agentshield scan .
Usage
Basic Scan
Run against the current project's `.claude/` directory:
# Scan current project
npx ecc-agentshield scan
# Scan a specific path
npx ecc-agentshield scan --path /path/to/.claude
# Scan with minimum severity filter
npx ecc-agentshield scan --min-severity medium
Output Formats
# Terminal output (default) — colored report with grade
npx ecc-agentshield scan
# JSON — for CI/CD integration
npx ecc-agentshield scan --format json
# Markdown — for documentation
npx ecc-agentshield scan --format markdown
# HTML — self-contained dark-theme report
npx ecc-agentshield scan --format html > security-report.html
Auto-Fix
Apply safe fixes automatically (only fixes marked as auto-fixable):
npx ecc-agentshield scan --fix
This will:
- Replace hardcoded secrets with environment variable references
- Tighten wildcard permissions to scoped alternatives
- Never modify manual-only suggestions
Opus 4.6 Deep Analysis
Run the adversarial three-agent pipeline for deeper analysis:
# Requires ANTHROPIC_API_KEY
export ANTHROPIC_API_KEY=your-key
npx ecc-agentshield scan --opus --stream
This runs: 1. **Attacker (Red Team)** — finds attack vectors 2. **Defender (Blue Team)** — recommends hardening 3. **Auditor (Final Verdict)** — synthesizes both perspectives
Initialize Secure Config
Scaffold a new secure `.claude/` configuration from scratch:
npx ecc-agentshield init
Creates:
- `settings.json` with scoped permissions and deny list
- `CLAUDE.md` with security best practices
- `mcp.json` placeholder
GitHub Action
Add to your CI pipeline:
- uses: affaan-m/agentshield@v1
with:
path: '.'
min-severity: 'medium'
fail-on-findings: trueSeverity Levels
| Grade | Score | Meaning | |-------|-------|---------| | A | 90-100 | Secure configuration | | B | 75-89 | Minor issues | | C | 60-74 | Needs attention | | D | 40-59 | Significant risks | | F | 0-39 | Critical vulnerabilities |
Interpreting Results
Critical Findings (fix immediately)
- Hardcoded API keys or tokens in config files
- `Bash(*)` in the allow list (unrestricted shell access)
- Command injection in hooks via `${file}` interpolation
- Shell-running MCP servers
High Findings (fix before production)
- Auto-run instructions in CLAUDE.md (prompt injection vector)
- Missing deny lists in permissions
- Agents with unnecessary Bash access
Medium Findings (recommended)
- Silent error suppression in hooks (`2>/dev/null`, `|| true`)
- Missing PreToolUse security hooks
- `npx -y` auto-install in MCP server configs
Info Findings (awareness)
- Missing descriptions on MCP servers
- Prohibitive instructions correctly flagged as good practice
Links
- **GitHub**: [github.com/affaan-m/agentshield](https://github.com/affaan-m/agentshield)
- **npm**: [npmjs.com/package/ecc-agentshield](https://www.npmjs.com/package/ecc-agentshield)
Read more
name: security-scan description: Scan your Claude Code configuration (.claude/ directory) for security vulnerabilities, misconfigurations, and injection risks using AgentShield. Checks CLAUDE.md, settings.json, MCP servers, hooks, and agent definitions. metadata: origin: ECC
Security Scan Skill
Audit your Claude Code configuration for security issues using [AgentShield](https://github.com/affaan-m/agentshield).
When to Activate
- Setting up a new Claude Code project
- After modifying `.claude/settings.json`, `CLAUDE.md`, or MCP configs
- Before committing configuration changes
- When onboarding to a new repository with existing Claude Code configs
- Periodic security hygiene checks
What It Scans
| File | Checks | |------|--------| | `CLAUDE.md` | Hardcoded secrets, auto-run instructions, prompt injection patterns | | `settings.json` | Overly permissive allow lists, missing deny lists, dangerous bypass flags | | `mcp.json` | Risky MCP servers, hardcoded env secrets, npx supply chain risks | | `hooks/` | Command injection via interpolation, data exfiltration, silent error suppression | | `agents/*.md` | Unrestricted tool access, prompt injection surface, missing model specs |
Prerequisites
AgentShield must be installed. Check and install if needed:
# Check if installed npx ecc-agentshield --version # Install globally (recommended) npm install -g ecc-agentshield # Or run directly via npx (no install needed) npx ecc-agentshield scan .
Usage
Basic Scan
Run against the current project's `.claude/` directory:
# Scan current project npx ecc-agentshield scan # Scan a specific path npx ecc-agentshield scan --path /path/to/.claude # Scan with minimum severity filter npx ecc-agentshield scan --min-severity medium
Output Formats
# Terminal output (default) — colored report with grade npx ecc-agentshield scan # JSON — for CI/CD integration npx ecc-agentshield scan --format json # Markdown — for documentation npx ecc-agentshield scan --format markdown # HTML — self-contained dark-theme report npx ecc-agentshield scan --format html > security-report.html
Auto-Fix
Apply safe fixes automatically (only fixes marked as auto-fixable):
npx ecc-agentshield scan --fix
This will:
- Replace hardcoded secrets with environment variable references
- Tighten wildcard permissions to scoped alternatives
- Never modify manual-only suggestions
Opus 4.6 Deep Analysis
Run the adversarial three-agent pipeline for deeper analysis:
# Requires ANTHROPIC_API_KEY export ANTHROPIC_API_KEY=your-key npx ecc-agentshield scan --opus --stream
This runs: 1. **Attacker (Red Team)** — finds attack vectors 2. **Defender (Blue Team)** — recommends hardening 3. **Auditor (Final Verdict)** — synthesizes both perspectives
Initialize Secure Config
Scaffold a new secure `.claude/` configuration from scratch:
npx ecc-agentshield init
Creates:
- `settings.json` with scoped permissions and deny list
- `CLAUDE.md` with security best practices
- `mcp.json` placeholder
GitHub Action
Add to your CI pipeline:
- uses: affaan-m/agentshield@v1
with:
path: '.'
min-severity: 'medium'
fail-on-findings: trueSeverity Levels
| Grade | Score | Meaning | |-------|-------|---------| | A | 90-100 | Secure configuration | | B | 75-89 | Minor issues | | C | 60-74 | Needs attention | | D | 40-59 | Significant risks | | F | 0-39 | Critical vulnerabilities |
Interpreting Results
Critical Findings (fix immediately)
- Hardcoded API keys or tokens in config files
- `Bash(*)` in the allow list (unrestricted shell access)
- Command injection in hooks via `${file}` interpolation
- Shell-running MCP servers
High Findings (fix before production)
- Auto-run instructions in CLAUDE.md (prompt injection vector)
- Missing deny lists in permissions
- Agents with unnecessary Bash access
Medium Findings (recommended)
- Silent error suppression in hooks (`2>/dev/null`, `|| true`)
- Missing PreToolUse security hooks
- `npx -y` auto-install in MCP server configs
Info Findings (awareness)
- Missing descriptions on MCP servers
- Prohibitive instructions correctly flagged as good practice
Links
- **GitHub**: [github.com/affaan-m/agentshield](https://github.com/affaan-m/agentshield)
- **npm**: [npmjs.com/package/ecc-agentshield](https://www.npmjs.com/package/ecc-agentshield)
An agentic development harness for Claude Code. **One command runs the entire feature pipeline** — it collaborates with you on the design, then builds autonomously: plan, execute, double-review, and verify.
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Questions about security-scan.
- Which coding agents can use security-scan?
- security-scan installs in Claude Code, Codex, Cursor, Gemini CLI, GitHub Copilot, OpenCode and Windsurf with the skills CLI, using each agent's flag shown on this page. Flowy's auto-invocation, which fires a skill when your prompt matches, runs in Claude Code only.

