sciagent-skill-creator
Scaffold a new SciAgent-Skills entry. Picks pipeline/toolkit/database/guide template, creates skills/{category}/{name}/SKILL.md with valid frontmatter, appends…
Query DDInter drug-drug interactions via REST API (1.7M+ interactions, 2,400+ drugs). Search by drug name/ID for severity (major/moderate/minor), mechanisms, and clinical recommendations. No auth. For FDA labeling use dailymed-database; for pharmacogenomics use clinpgx-database.
$ npx -y skills add jaechang-hits/SciAgent-Skills --skill ddinter-database --agent claude-codeHow it fires
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Query DDInter drug-drug interactions via REST API (1.7M+ interactions, 2,400+ drugs). Search by drug name/ID for severity (major/moderate/minor), mechanisms, and clinical recommendations. No auth. For FDA labeling use dailymed-database; for pharmacogenomics use clinpgx-database.
name: "ddinter-database" description: "Query DDInter drug-drug interactions via REST API (1.7M+ interactions, 2,400+ drugs). Search by drug name/ID for severity (major/moderate/minor), mechanisms, and clinical recommendations. No auth. For FDA labeling use dailymed-database; for pharmacogenomics use clinpgx-database." license: "CC-BY-4.0"
DDInter is an open, curated database of drug-drug interactions (DDIs) covering 2,400+ drugs and 1.7M+ pairwise interactions with structured severity levels (major, moderate, minor), mechanistic annotations, and clinical management recommendations. Access is provided via a JSON REST API at `https://ddinter.scbdd.com/api/` — no authentication or registration required.
pip install requests pandas matplotlib networkx
import requests
BASE = "https://ddinter.scbdd.com/api"
# Search for a drug by name
r = requests.get(f"{BASE}/drug/", params={"drug_name": "warfarin", "format": "json"}, timeout=15)
r.raise_for_status()
data = r.json()
print(f"Results for 'warfarin': {data['count']} drugs found")
for drug in data["results"][:3]:
print(f" ID={drug['ddinter_id']} Name={drug['drug_name']}")
# Results for 'warfarin': 1 drugs found
# ID=DDInter_D00001 Name=WarfarinFind a drug's DDInter ID by searching its name. The DDInter ID is required for all interaction queries.
import requests
import pandas as pd
BASE = "https://ddinter.scbdd.com/api"
def search_drug(drug_name):
"""Search DDInter for a drug by name. Returns list of matching drug records."""
r = requests.get(f"{BASE}/drug/",
params={"drug_name": drug_name, "format": "json"},
timeout=15)
r.raise_for_status()
return r.json()
# Search for warfarin
result = search_drug("warfarin")
print(f"Matches: {result['count']}")
if result["results"]:
drug = result["results"][0]
print(f"DDInter ID: {drug['ddinter_id']}")
print(f"Drug name: {drug['drug_name']}")
# Store DDInter ID for interaction queries
warfarin_id = drug["ddinter_id"]
print(f"\nWarfarin DDInter ID: {warfarin_id}")
# Batch name lookup
drugs_to_find = ["warfarin", "aspirin", "atorvastatin", "metformin", "amiodarone"]
id_map = {}
for name in drugs_to_find:
res = search_drug(name)
if res["results"]:
id_map[name] = res["results"][0]["ddinter_id"]
print(f" {name:20s} → {res['results'][0]['ddinter_id']}")Retrieve all known DDIs for a drug by its DDInter ID. Returns interaction partners, severity, and clinical information.
import requests
import pandas as pd
BASE = "https://ddinter.scbdd.com/api"
def get_drug_interactions(drug_id, page_size=100):
"""Get all DDIs for a drug by DDInter ID. Handles pagination automatically."""
all_interactions = []
url = f"{BASE}/interaction/"
params = {"drug_id": drug_id, "format": "json", "page_size": page_size}
while url:
r = requests.get(url, params=params, timeout=20)
r.raise_for_status()
data = r.json()
all_interactions.extend(data.get("results", []))
url = data.get("next") # None when last page
params = {} # next URL already includes params
return all_interactions
# Get all interactions for warfarin (DDInter_D00001)
interactions = get_drug_interactions("DDInter_D00001")
print(f"Warfarin total interactions: {len(interactions)}")
# Summarize by severity
df = pd.DataFrame(interactions)
if not df.empty and "level" in df.columns:
severity_counts = df["level"].value_counts()
print("\nInteractions by severity:")
for level, count in severity_counts.items():
print(f" {level:15s}: {count:4d}")
# Major: 45
# Moderate: 312
# Minor: 198Retrieve full details for a specific drug-drug interaction, including mechanism and clinical recommendation.
import requests
BASE = "https://ddinter.scbdd.com/api"
def get_interaction_detail(interaction_id):
"""Get full details for a specific interaction by its DDInter interaction ID."""
r = requests.get(f"{BASE}/interaction/{interaction_id}/",
params={"format": "json"},
timeout=15)
r.raise_for_status()
return r.json()
# Example interaction ID (format: DDInter_I_XXXXXX)
interaction_id = "DDInter_I_000001" # example
try:
detail = get_interaction_detail(interaction_id)
print(f"Interaction: {detail.get('interaction_id')}")
print(f"Drug A: {detail.get('drug_a')}")
print(Turn your AI coding agent into a life sciences expert — 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and more. Boosted BixBench from 65% to 92%. Open source.
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