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/i1

Paper Retrieval Agent - Multi-database paper fetching from Semantic Scholar, OpenAlex, arXiv Handles rate limiting, deduplication, and PDF URL extraction Use when: fetching papers, searching databases, paper retrieval Triggers: fetch papers, retrieve papers, database search,

From plugin
auto-empirical-research-skills
3.8k200 skills
Install
$ npx -y skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill i1 --agent claude-code

How it fires

How this skill gets triggered: by you, by Claude, or both.

  • Fires itselfAuto-invocation. Claude auto-loads it when your prompt matches the work.Auto-invocation is when the right skill fires by itself at the right moment, driven by a FLOW.md router and a hook, instead of you invoking it by name. It is the difference between a skill being installed and a skill actually getting used.Read the full definition →
  • You can call itInvoke it directly when you want it.
  • Slash command/i1

Context preview

The summary Claude sees to decide when to auto-load this skill.

Paper Retrieval Agent - Multi-database paper fetching from Semantic Scholar, OpenAlex, arXiv Handles rate limiting, deduplication, and PDF URL extraction Use when: fetching papers, searching databases, paper retrieval Triggers: fetch papers, retrieve papers, database search,

SKILL.md

i1.SKILL.md
name: i1
description: |
  Paper Retrieval Agent - Multi-database paper fetching from Semantic Scholar, OpenAlex, arXiv
  Handles rate limiting, deduplication, and PDF URL extraction
  Use when: fetching papers, searching databases, paper retrieval
  Triggers: fetch papers, retrieve papers, database search, Semantic Scholar, OpenAlex, arXiv
version: "12.0.1"

⛔ Prerequisites (v8.2 — MCP Enforcement)

No prerequisites required for this agent.

Checkpoints During Execution

  • 🔴 SCH_DATABASE_SELECTION → `diverga_mark_checkpoint("SCH_DATABASE_SELECTION", decision, rationale)`
  • 🔴 SCH_API_KEY_VALIDATION → `diverga_mark_checkpoint("SCH_API_KEY_VALIDATION", decision, rationale)`

Fallback (MCP unavailable)

Read `research/decision-log.yaml` (or `.research/decision-log.yaml` for legacy projects) directly to verify prerequisites. Conversation history is last resort.

---

I1-PaperRetrievalAgent

**Agent ID**: I1 **Category**: I - Systematic Review Automation **Tier**: MEDIUM (Sonnet) **Icon**: 📄🔍

Overview

Executes multi-database paper retrieval for systematic literature reviews. Queries Semantic Scholar, OpenAlex, and arXiv (open access), with optional Scopus and Web of Science (institutional). Handles rate limiting, deduplication, and PDF URL extraction.

Capabilities

Open Access Databases (No API Key Required)

| Database | API | PDF Availability | Rate Limit | |----------|-----|------------------|------------| | **Semantic Scholar** | REST | ~40% open access | 100 req/5min | | **OpenAlex** | REST | ~50% open access | Polite pool (email) | | **arXiv** | OAI-PMH | 100% | 3s delay |

Institutional Databases (API Key Required)

| Database | API Key Env | Coverage | |----------|-------------|----------| | **Scopus** | `SCOPUS_API_KEY` | Comprehensive metadata | | **Web of Science** | `WOS_API_KEY` | Citation data |

Social Science Databases (Recommended for Social Science Research)

| Database | Access | Coverage | Best For | |----------|--------|----------|----------| | **ERIC** | Free API (IES) | 1.9M+ records | Education research, K-12, higher ed | | **PsycINFO** | APA subscription | 5M+ records | Psychology, behavioral science | | **SSRN** | Open access | 1M+ preprints | Working papers, social science | | **ProQuest Dissertations** | Institutional | 5M+ dissertations | Doctoral research, theses |

> 💡 **Social science focus**: These databases are essential for education, psychology, and social work research. ERIC and SSRN are freely accessible. PsycINFO and ProQuest require institutional access.

API Key Configuration

| Database | API Key Env | Coverage | Primary Discipline | |----------|-------------|----------|-------------------| | **ERIC** | `ERIC_API_KEY` | Education research | Education | | **PsycINFO** (via APA PsycNET) | `PSYCINFO_API_KEY` | Psychology & behavioral sciences | Psychology | | **SSRN** | — (open access) | Social science preprints | Multi-discipline | | **ProQuest** | `PROQUEST_API_KEY` | Dissertations & theses | Multi-discipline |

ERIC API Integration Example

# ERIC API (free, no key required for basic search)
curl "https://api.ies.ed.gov/eric/?search=meta-analysis+education+technology&format=json&rows=50"

ERIC fields: title, author, source, publicationdateyear, description, subject, peerreviewed

Database Selection Guide

| Research Area | Recommended Databases | |--------------|----------------------| | Education | ERIC + Semantic Scholar + OpenAlex | | Psychology | PsycINFO + Semantic Scholar + OpenAlex | | Social Work | Semantic Scholar + OpenAlex + SSRN | | Interdisciplinary | OpenAlex + Semantic Scholar + ERIC + PsycINFO | | STEM crossover | arXiv + Semantic Scholar + OpenAlex | | Dissertations | ProQuest + OpenAlex |

Input Schema

Required:
  - query: "string"
  - databases: "list[enum[semantic_scholar, openalex, arxiv, scopus, wos, eric, psycinfo, ssrn, proquest]]"

Optional:
  - year_range: "list[int, int]"
  - max_results_per_db: "int"
  - open_access_only: "boolean"

Output Schema

main_output:
  databases_queried: "list[string]"
  results:
    semantic_scholar: "int"
    openalex: "int"
    arxiv: "int"
  total_identified: "int"
  after_deduplication: "int"
  duplicates_removed: "int"
  output_file: "string"

Human Checkpoint Protocol

🔴 SCH_DATABASE_SELECTION (REQUIRED)

Before executing queries, I1 MUST:

1. **PRESENT** database options:

   Available databases for your systematic review:

   ✅ Open Access (recommended):
   - Semantic Scholar (~40% PDF URLs)
   - OpenAlex (~50% PDF URLs)
   - arXiv (100% PDF access)

   🔒 Institutional (requires API keys):
   - Scopus (SCOPUS_API_KEY: {status})
   - Web of Science (WOS_API_KEY: {status})

   📚 Social Science:
   - ERIC (free, education research)
   - PsycINFO (PSYCINFO_API_KEY: {status})
   - SSRN (open access, preprints)
   - ProQuest Dissertations (PROQUEST_API_KEY: {status})

   Which databases would you like to query?

2. **WAIT** for explicit user selection 3. **CONFIRM** selection before executing

🔴 SCH_API_KEY_VALIDATION (REQUIRED)

After database selection, I1 MUST validate API keys:

1. **CHECK** environment for required keys:

  • Semantic Scholar: `S2_API_KEY` (optional but recommended for higher rate limits)
  • OpenAlex: Email for polite pool (optional)
  • arXiv: No key needed
  • Scopus: `SCOPUS_API_KEY` (required if selected)
  • Web of Science: `WOS_API_KEY` (required if selected)
  • ERIC: `ERIC_API_KEY` (optional, basic search is free)
  • PsycINFO: `PSYCINFO_API_KEY` (required if selected)
  • SSRN: No key needed
  • ProQuest: `PROQUEST_API_KEY` (required if selected)

2. **IF** any selected database requires a missing key: → Call AskUserQuestion with SCH_API_KEY_VALIDATION template → WAIT for user response → If "Provide Key": Show setup instructions (`export SCOPUS_API_KEY=your_key`), then re-validate → If "Skip DB": Remove from selectio

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Ships withauto-empirical-research-skills

📌 文档结构(2026-07-22 起): 本文件是中文默认入口 —— banner + badges + 信任面 + 9 阶段流水线速览 + 76 行合集总表。 每个合集的完整描述、按用途分组、精确数字、验证方法在 docs/CONTENT_ZH.md(扩展正文,总表行内的 → 直接跳转到对应锚点)。 English version: README-en.md · 中文扩展正文:docs/CONTENT_ZH.md · README-zh-CN.md 已弃用(重定向占位) 🌐 语言: English |

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