# sciagent-skills

Turn your AI coding agent into a life sciences expert — 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and more. Boosted BixBench from 65% to 92%. Open source.

- Tier: Indexed (plain plugin)
- Category: Development
- Page: https://www.flowy.sh/listings/jaechang-hits-sciagent-skills
- Source: https://github.com/jaechang-hits/SciAgent-Skills
- Price: free and open source

## Summary
sciagent-skills is a Claude Code plugin with 199 hand-picked skills for development work, indexed on Flowy. Install it with the command on its page. It includes sciagent-skill-creator, pymc-bayesian-modeling, scikit-survival-analysis. Its skills do not fire on their own yet. Request auto-invocation to have Flowy route them as you prompt. Free and open source.

## Install (Claude Code)
```
npx -y skills add jaechang-hits/sciagent-skills
```

## Skills
- sciagent-skill-creator
- pymc-bayesian-modeling
- scikit-survival-analysis
- statistical-analysis
- statsmodels-statistical-modeling
- cellpose-cell-segmentation
- flowio-flow-cytometry
- napari-image-viewer
- opencv-bioimage-analysis
- pyimagej-fiji-bridge
- scikit-image-processing
- trackpy-particle-tracking
- matplotlib-scientific-plotting
- plotly-interactive-plots
- scientific-visualization
- seaborn-statistical-plots
- statistical-significance-annotation
- bwa-mem2-dna-aligner
- pysam-genomic-files
- samtools-bam-processing
- star-rna-seq-aligner
- bakta-genome-annotation
- prokka-genome-annotation
- roary-pangenome
- arboreto-grn-inference
- biopython-molecular-biology
- biopython-sequence-analysis
- archs4-database
- bioservices-multi-database
- cbioportal-database
- clinpgx-database
- clinvar-database
- cosmic-database
- dbsnp-database
- depmap-crispr-essentiality
- ena-database
- encode-database
- ensembl-database
- gene-database
- geo-database
- gget-genomic-databases
- gnomad-database
- gwas-database
- jaspar-database
- kegg-database
- monarch-database
- mouse-phenome-database
- quickgo-database
- regulomedb-database
- remap-database
- ucsc-genome-browser
- etetoolkit
- homer-motif-analysis
- bedtools-genomic-intervals
- deeptools-ngs-analysis
- geniml
- gtars
- macs3-peak-calling
- busco-status-interpretation
- fastp-fastq-preprocessing
- multiqc-qc-reports
- deseq2-differential-expression
- featurecounts-rna-counting
- gseapy-gene-enrichment
- pydeseq2-differential-expression
- salmon-rna-quantification
- scikit-bio
- anndata-data-structure
- celltypist-cell-annotation
- cellxgene-census
- harmony-batch-correction
- popv-cell-annotation
- scanpy-scrna-seq
- scvi-tools-single-cell
- single-cell-annotation-guide
- bcftools-variant-manipulation
- cnvkit-copy-number
- gatk-variant-calling
- plink2-gwas-analysis
- snpeff-variant-annotation
- vcf-variant-filtering
- benchling-integration
- opentrons-protocol-api
- protocolsio-integration
- pylabrobot
- western-blot-quantification
- histolab-wsi-processing
- imaging-data-commons
- nnunet-segmentation
- omero-integration
- pathml
- pydicom-medical-imaging
- simpleitk-image-registration
- plannotate-plasmid-annotation
- sgrna-design-guide
- viennarna-structure-prediction
- adaptyv-bio
- esm-protein-language-model
- hmdb-database
- interpro-database
- matchms-spectral-matching
- maxquant-proteomics
- metabolomics-workbench-database
- pride-database
- pyopenms-mass-spectrometry
- uniprot-protein-database
- aeon
- astropy-astronomy
- dask-parallel-computing
- degenerate-input-filtering
- exploratory-data-analysis
- geopandas-geospatial
- hypogenic-hypothesis-generation
- matlab-scientific-computing
- nan-safe-correlation
- networkx-graph-analysis
- neurokit2
- neuropixels-analysis
- nextflow-workflow-engine
- polars-dataframes
- pyhealth
- pymatgen
- pymoo
- scikit-learn-machine-learning
- shap-model-explainability
- simpy-discrete-event-simulation
- snakemake-workflow-engine
- spikeinterface-electrophysiology
- sympy-symbolic-math
- torch-geometric-graph-neural-networks
- transformers-bio-nlp
- umap-learn
- uspto-database
- vaex-dataframes
- zarr-python
- biorxiv-database
- cancer-research-figure-guide
- cell-figure-guide
- citation-management
- clinical-decision-support-documents
- elife-figure-guide
- general-figure-guide
- hypothesis-generation
- lancet-figure-guide
- latex-research-posters
- literature-review
- nature-figure-guide
- nejm-figure-guide
- openalex-database
- peer-review-methodology
- pnas-figure-guide
- pubmed-database
- science-figure-guide
- scientific-brainstorming
- scientific-critical-thinking
- scientific-literature-search
- scientific-manuscript-writing
- scientific-schematics
- scientific-slides
- alphafold-database-access
- autodock-vina-docking
- chembl-database-bioactivity
- clinicaltrials-database-search
- dailymed-database
- datamol-cheminformatics
- ddinter-database
- deepchem
- diffdock
- drugbank-database-access
- emdb-database
- fda-database
- gtopdb-database
- mdanalysis-trajectory
- mdtraj-trajectory-analysis
- medchem
- molfeat-molecular-featurization
- opentargets-database
- pdb-database
- pubchem-compound-search
- pytdc-therapeutics-data-commons
- rdkit-chemdraw-cdxml
- rdkit-cheminformatics
- rowan
- sar-analysis
- smina-molecular-docking
- torchdrug
- unichem-database
- zinc-database
- brenda-database
- cellchat-cell-communication
- cobrapy-metabolic-modeling
- kegg-pathway-analysis
- lamindb-data-management
- libsbml-network-modeling
- mofaplus-multi-omics
- muon-multiomics-singlecell
- omics-analysis-guide
- reactome-database
- string-database-ppi

## FAQ

### What is sciagent-skills?
Turn your AI coding agent into a life sciences expert — 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and more. Boosted BixBench from 65% to 92%. Open source.

### How do I install sciagent-skills?
Run these in Claude Code: npx -y skills add jaechang-hits/sciagent-skills. Then prompt normally.

### Does sciagent-skills auto-invoke its skills?
Not yet. It is indexed on Flowy as a plain plugin. Request auto-invocation on its page and Flowy will route its skills for you as you prompt.

### Is sciagent-skills free?
Yes. Flowy is free and open source, with nothing gated. You can read every skill in full before you install.